Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4085 and HP15_4086 are separated by 166 nucleotides HP15_4086 and HP15_4087 are separated by 18 nucleotides HP15_4087 and HP15_4088 are separated by 262 nucleotides
HP15_4085: HP15_4085 - protein containing methyltransferase type 12 domain, at 4,317,910 to 4,318,665
_4085
HP15_4086: HP15_4086 - ATPase, ParA family protein, at 4,318,832 to 4,319,572
_4086
HP15_4087: HP15_4087 - transcriptional regulator, GntR family, at 4,319,591 to 4,320,322
_4087
HP15_4088: HP15_4088 - L-lactate dehydrogenase, LutA subunit <small>(from data)</small>, at 4,320,585 to 4,321,424
_4088
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4318.626 kb on - strand at 4318.760 kb on - strand at 4318.765 kb on - strand at 4318.839 kb on - strand at 4318.864 kb on - strand at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.931 kb on - strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4319.025 kb on - strand, within HP15_4086 at 4319.153 kb on - strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.364 kb on - strand, within HP15_4086 at 4319.399 kb on - strand, within HP15_4086 at 4319.413 kb on + strand, within HP15_4086 at 4319.425 kb on + strand, within HP15_4086 at 4319.566 kb on + strand at 4319.574 kb on - strand at 4319.597 kb on - strand at 4319.676 kb on + strand, within HP15_4087 at 4319.718 kb on - strand, within HP15_4087 at 4319.743 kb on + strand, within HP15_4087 at 4319.745 kb on + strand, within HP15_4087 at 4319.753 kb on - strand, within HP15_4087 at 4320.079 kb on - strand, within HP15_4087 at 4320.225 kb on - strand, within HP15_4087 at 4320.314 kb on - strand at 4320.316 kb on + strand at 4320.358 kb on - strand at 4320.436 kb on - strand at 4320.626 kb on + strand at 4320.626 kb on + strand at 4320.658 kb on + strand at 4320.705 kb on + strand, within HP15_4088 at 4320.801 kb on - strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.841 kb on - strand, within HP15_4088 at 4320.929 kb on + strand, within HP15_4088 at 4321.002 kb on + strand, within HP15_4088 at 4321.005 kb on - strand, within HP15_4088 at 4321.131 kb on - strand, within HP15_4088 at 4321.142 kb on + strand, within HP15_4088
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 4,318,626 - -0.3 4,318,760 - -0.2 4,318,765 - -0.4 4,318,839 - -0.5 4,318,864 - -3.2 4,318,923 + HP15_4086 0.12 -0.2 4,318,923 + HP15_4086 0.12 +0.0 4,318,923 + HP15_4086 0.12 -0.3 4,318,931 - HP15_4086 0.13 -0.4 4,318,933 + HP15_4086 0.14 +2.4 4,318,933 + HP15_4086 0.14 -2.1 4,318,941 - HP15_4086 0.15 -1.4 4,318,941 - HP15_4086 0.15 -0.9 4,318,941 - HP15_4086 0.15 -0.6 4,319,025 - HP15_4086 0.26 -0.5 4,319,153 - HP15_4086 0.43 +0.9 4,319,192 + HP15_4086 0.49 -0.3 4,319,192 + HP15_4086 0.49 +0.0 4,319,364 - HP15_4086 0.72 +0.3 4,319,399 - HP15_4086 0.77 -0.3 4,319,413 + HP15_4086 0.78 -0.7 4,319,425 + HP15_4086 0.80 -0.5 4,319,566 + +1.0 4,319,574 - +1.0 4,319,597 - -1.1 4,319,676 + HP15_4087 0.12 -1.0 4,319,718 - HP15_4087 0.17 -0.7 4,319,743 + HP15_4087 0.21 +0.9 4,319,745 + HP15_4087 0.21 +0.5 4,319,753 - HP15_4087 0.22 -0.8 4,320,079 - HP15_4087 0.67 -0.9 4,320,225 - HP15_4087 0.87 -2.5 4,320,314 - +0.2 4,320,316 + +0.4 4,320,358 - -0.6 4,320,436 - +0.9 4,320,626 + -1.5 4,320,626 + -0.9 4,320,658 + -1.0 4,320,705 + HP15_4088 0.14 -0.7 4,320,801 - HP15_4088 0.26 -1.4 4,320,833 + HP15_4088 0.30 -0.4 4,320,833 + HP15_4088 0.30 -0.2 4,320,841 - HP15_4088 0.30 -0.3 4,320,929 + HP15_4088 0.41 -1.2 4,321,002 + HP15_4088 0.50 -1.3 4,321,005 - HP15_4088 0.50 +0.2 4,321,131 - HP15_4088 0.65 -2.0 4,321,142 + HP15_4088 0.66 -0.7
Or see this region's nucleotide sequence