Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3929 and HP15_3930 are separated by 39 nucleotides HP15_3930 and HP15_3931 are separated by 25 nucleotides HP15_3931 and HP15_3932 are separated by 72 nucleotides HP15_3932 and HP15_3933 are separated by 308 nucleotides
HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845
_3929
HP15_3930: HP15_3930 - putative two component system response regulator, at 4,159,885 to 4,160,151
_3930
HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458
_3931
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
HP15_3933: HP15_3933 - hypothetical protein, at 4,161,439 to 4,161,600
_3933
Position (kb) 4160
4161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4159.179 kb on - strand, within HP15_3929 at 4159.228 kb on + strand, within HP15_3929 at 4159.257 kb on + strand, within HP15_3929 at 4159.356 kb on + strand, within HP15_3929 at 4159.364 kb on - strand, within HP15_3929 at 4159.415 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.460 kb on + strand, within HP15_3929 at 4159.463 kb on - strand, within HP15_3929 at 4159.470 kb on + strand, within HP15_3929 at 4159.482 kb on - strand, within HP15_3929 at 4159.613 kb on + strand, within HP15_3929 at 4159.654 kb on + strand, within HP15_3929 at 4159.659 kb on - strand, within HP15_3929 at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.793 kb on + strand at 4160.059 kb on - strand, within HP15_3930 at 4160.086 kb on - strand, within HP15_3930 at 4160.114 kb on + strand, within HP15_3930 at 4160.190 kb on + strand at 4160.193 kb on - strand at 4160.260 kb on + strand, within HP15_3931 at 4160.426 kb on + strand, within HP15_3931 at 4160.461 kb on - strand at 4160.590 kb on - strand at 4160.600 kb on + strand, within HP15_3932 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.935 kb on + strand, within HP15_3932 at 4161.020 kb on + strand, within HP15_3932 at 4161.153 kb on + strand at 4161.272 kb on - strand at 4161.330 kb on - strand at 4161.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 4,159,179 - HP15_3929 0.44 +0.3 4,159,228 + HP15_3929 0.48 -1.2 4,159,257 + HP15_3929 0.51 -0.3 4,159,356 + HP15_3929 0.59 +0.8 4,159,364 - HP15_3929 0.60 +1.4 4,159,415 + HP15_3929 0.64 -0.1 4,159,437 + HP15_3929 0.66 -0.4 4,159,437 + HP15_3929 0.66 -0.3 4,159,437 + HP15_3929 0.66 -0.0 4,159,445 - HP15_3929 0.66 +0.5 4,159,445 - HP15_3929 0.66 -0.6 4,159,445 - HP15_3929 0.66 +0.1 4,159,445 - HP15_3929 0.66 -0.4 4,159,445 - HP15_3929 0.66 -1.1 4,159,460 + HP15_3929 0.68 +0.3 4,159,463 - HP15_3929 0.68 -0.9 4,159,470 + HP15_3929 0.69 -0.1 4,159,482 - HP15_3929 0.70 -0.5 4,159,613 + HP15_3929 0.81 -0.3 4,159,654 + HP15_3929 0.84 -1.0 4,159,659 - HP15_3929 0.84 +0.9 4,159,745 + +0.9 4,159,745 + -0.1 4,159,745 + -0.0 4,159,745 + -0.4 4,159,753 - -0.4 4,159,753 - -0.2 4,159,753 - -0.7 4,159,793 + +0.3 4,160,059 - HP15_3930 0.65 +0.1 4,160,086 - HP15_3930 0.75 -0.6 4,160,114 + HP15_3930 0.86 -1.3 4,160,190 + +0.5 4,160,193 - +1.3 4,160,260 + HP15_3931 0.29 +0.1 4,160,426 + HP15_3931 0.88 -0.5 4,160,461 - -0.0 4,160,590 - -0.2 4,160,600 + HP15_3932 0.12 +0.2 4,160,702 + HP15_3932 0.28 -0.3 4,160,814 + HP15_3932 0.47 -0.8 4,160,839 + HP15_3932 0.51 -0.1 4,160,839 + HP15_3932 0.51 -0.4 4,160,935 + HP15_3932 0.67 -1.8 4,161,020 + HP15_3932 0.81 +0.9 4,161,153 + -0.3 4,161,272 - +0.9 4,161,330 - +2.4 4,161,333 + -0.1
Or see this region's nucleotide sequence