Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3320 and HP15_3321 are separated by 186 nucleotides HP15_3321 and HP15_3322 are separated by 228 nucleotides HP15_3322 and HP15_3323 are separated by 11 nucleotides HP15_3323 and HP15_3324 are separated by 64 nucleotides
HP15_3320: HP15_3320 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase, at 3,481,877 to 3,483,076
_3320
HP15_3321: HP15_3321 - DNA repair protein RadC-like protein, at 3,483,263 to 3,483,937
_3321
HP15_3322: HP15_3322 - ribosomal protein L28, at 3,484,166 to 3,484,402
_3322
HP15_3323: HP15_3323 - ribosomal protein L33, at 3,484,414 to 3,484,569
_3323
HP15_3324: HP15_3324 - endonuclease/exonuclease/phosphatase, at 3,484,634 to 3,485,494
_3324
Position (kb)
3483
3484 Strain fitness (log2 ratio)
-2
-1
0
1 at 3483.331 kb on - strand, within HP15_3321 at 3483.406 kb on + strand, within HP15_3321 at 3483.463 kb on + strand, within HP15_3321 at 3483.479 kb on + strand, within HP15_3321 at 3483.480 kb on - strand, within HP15_3321 at 3483.674 kb on - strand, within HP15_3321 at 3483.688 kb on + strand, within HP15_3321 at 3483.787 kb on + strand, within HP15_3321 at 3483.931 kb on + strand at 3484.640 kb on - strand at 3484.685 kb on - strand at 3484.731 kb on - strand, within HP15_3324 at 3484.800 kb on + strand, within HP15_3324 at 3484.920 kb on - strand, within HP15_3324
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 3,483,331 - HP15_3321 0.10 +0.9 3,483,406 + HP15_3321 0.21 +0.5 3,483,463 + HP15_3321 0.30 -1.9 3,483,479 + HP15_3321 0.32 +0.2 3,483,480 - HP15_3321 0.32 +0.6 3,483,674 - HP15_3321 0.61 +0.3 3,483,688 + HP15_3321 0.63 +0.0 3,483,787 + HP15_3321 0.78 -1.6 3,483,931 + +1.3 3,484,640 - +0.7 3,484,685 - +0.1 3,484,731 - HP15_3324 0.11 -0.6 3,484,800 + HP15_3324 0.19 +1.5 3,484,920 - HP15_3324 0.33 -1.0
Or see this region's nucleotide sequence