Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_293 and HP15_294 are separated by 210 nucleotides HP15_294 and HP15_295 are separated by 7 nucleotides HP15_295 and HP15_296 are separated by 267 nucleotides
HP15_293: HP15_293 - DNA polymerase I, at 284,328 to 286,936
_293
HP15_294: HP15_294 - conserved hypothetical protein, secreted, at 287,147 to 287,485
_294
HP15_295: HP15_295 - fibronectin, type III domain protein, at 287,493 to 287,984
_295
HP15_296: HP15_296 - conserved hypothetical protein, at 288,252 to 288,674
_296
Position (kb) 287
288 Strain fitness (log2 ratio) -1
0
1 at 287.059 kb on + strand at 287.092 kb on + strand at 287.102 kb on + strand at 287.105 kb on - strand at 287.323 kb on - strand, within HP15_294 at 287.339 kb on + strand, within HP15_294 at 287.395 kb on + strand, within HP15_294 at 287.504 kb on - strand at 287.643 kb on - strand, within HP15_295 at 287.721 kb on + strand, within HP15_295 at 287.729 kb on + strand, within HP15_295 at 287.754 kb on - strand, within HP15_295 at 287.852 kb on + strand, within HP15_295 at 288.205 kb on + strand at 288.218 kb on - strand at 288.260 kb on + strand at 288.268 kb on - strand at 288.348 kb on - strand, within HP15_296 at 288.384 kb on + strand, within HP15_296 at 288.388 kb on + strand, within HP15_296
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 287,059 + -0.6 287,092 + -1.6 287,102 + -1.2 287,105 - -0.2 287,323 - HP15_294 0.52 +0.1 287,339 + HP15_294 0.57 +0.4 287,395 + HP15_294 0.73 +1.2 287,504 - -0.6 287,643 - HP15_295 0.30 +0.5 287,721 + HP15_295 0.46 +0.9 287,729 + HP15_295 0.48 +1.4 287,754 - HP15_295 0.53 -0.6 287,852 + HP15_295 0.73 +0.1 288,205 + +1.3 288,218 - +0.2 288,260 + +0.3 288,268 - -0.6 288,348 - HP15_296 0.23 +1.1 288,384 + HP15_296 0.31 +0.7 288,388 + HP15_296 0.32 +0.0
Or see this region's nucleotide sequence