Strain Fitness in Marinobacter adhaerens HP15 around HP15_2506

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2505 and HP15_2506 overlap by 6 nucleotidesHP15_2506 and HP15_2507 are separated by 253 nucleotides HP15_2505: HP15_2505 - iron-sulfur cluster binding protein, at 2,646,155 to 2,647,234 _2505 HP15_2506: HP15_2506 - oligoribonuclease, at 2,647,229 to 2,647,771 _2506 HP15_2507: HP15_2507 - ribosome-associated GTPase, at 2,648,025 to 2,649,080 _2507 Position (kb) 2647 2648Strain fitness (log2 ratio) -2 -1 0 1at 2646.275 kb on + strand, within HP15_2505at 2646.359 kb on + strand, within HP15_2505at 2646.397 kb on + strand, within HP15_2505at 2646.405 kb on - strand, within HP15_2505at 2646.478 kb on + strand, within HP15_2505at 2646.483 kb on + strand, within HP15_2505at 2646.619 kb on + strand, within HP15_2505at 2646.623 kb on - strand, within HP15_2505at 2646.640 kb on - strand, within HP15_2505at 2646.640 kb on - strand, within HP15_2505at 2646.739 kb on - strand, within HP15_2505at 2646.765 kb on + strand, within HP15_2505at 2646.765 kb on + strand, within HP15_2505at 2646.774 kb on + strand, within HP15_2505at 2646.782 kb on - strand, within HP15_2505at 2646.782 kb on - strand, within HP15_2505at 2646.782 kb on - strand, within HP15_2505at 2646.782 kb on - strand, within HP15_2505at 2646.865 kb on + strand, within HP15_2505at 2646.939 kb on - strand, within HP15_2505at 2646.944 kb on - strand, within HP15_2505at 2646.992 kb on + strand, within HP15_2505at 2647.029 kb on + strand, within HP15_2505at 2647.052 kb on - strand, within HP15_2505at 2647.091 kb on + strand, within HP15_2505at 2647.105 kb on - strand, within HP15_2505at 2647.120 kb on + strand, within HP15_2505at 2647.201 kb on + strandat 2647.219 kb on - strandat 2647.227 kb on + strandat 2647.234 kb on - strandat 2647.937 kb on - strandat 2647.974 kb on + strandat 2648.144 kb on + strand, within HP15_2507at 2648.157 kb on - strand, within HP15_2507

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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2,646,275 + HP15_2505 0.11 +0.7
2,646,359 + HP15_2505 0.19 +0.8
2,646,397 + HP15_2505 0.22 +0.4
2,646,405 - HP15_2505 0.23 +0.4
2,646,478 + HP15_2505 0.30 -0.4
2,646,483 + HP15_2505 0.30 +0.1
2,646,619 + HP15_2505 0.43 -0.2
2,646,623 - HP15_2505 0.43 -0.5
2,646,640 - HP15_2505 0.45 -0.4
2,646,640 - HP15_2505 0.45 +1.5
2,646,739 - HP15_2505 0.54 -0.1
2,646,765 + HP15_2505 0.56 -0.3
2,646,765 + HP15_2505 0.56 +0.2
2,646,774 + HP15_2505 0.57 -1.0
2,646,782 - HP15_2505 0.58 +0.8
2,646,782 - HP15_2505 0.58 +0.8
2,646,782 - HP15_2505 0.58 -0.2
2,646,782 - HP15_2505 0.58 +0.7
2,646,865 + HP15_2505 0.66 +0.0
2,646,939 - HP15_2505 0.73 -0.5
2,646,944 - HP15_2505 0.73 -0.2
2,646,992 + HP15_2505 0.78 +1.3
2,647,029 + HP15_2505 0.81 +0.7
2,647,052 - HP15_2505 0.83 +0.6
2,647,091 + HP15_2505 0.87 -2.7
2,647,105 - HP15_2505 0.88 +1.2
2,647,120 + HP15_2505 0.89 -1.0
2,647,201 + +1.2
2,647,219 - -0.7
2,647,227 + +0.8
2,647,234 - -0.3
2,647,937 - +0.9
2,647,974 + -1.1
2,648,144 + HP15_2507 0.11 -1.6
2,648,157 - HP15_2507 0.12 +1.4

Or see this region's nucleotide sequence