Strain Fitness in Marinobacter adhaerens HP15 around HP15_2188

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2187 and HP15_2188 are separated by 83 nucleotidesHP15_2188 and HP15_2189 are separated by 150 nucleotides HP15_2187: HP15_2187 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 2,302,382 to 2,303,284 _2187 HP15_2188: HP15_2188 - malate synthase G, at 2,303,368 to 2,305,548 _2188 HP15_2189: HP15_2189 - cysteinyl-tRNA synthetase, at 2,305,699 to 2,307,087 _2189 Position (kb) 2303 2304 2305 2306Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2303.305 kb on - strandat 2303.664 kb on + strand, within HP15_2188at 2304.350 kb on - strand, within HP15_2188at 2304.394 kb on + strand, within HP15_2188at 2304.778 kb on - strand, within HP15_2188at 2305.115 kb on + strand, within HP15_2188at 2305.145 kb on - strand, within HP15_2188at 2305.252 kb on + strand, within HP15_2188at 2305.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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2,303,305 - -0.8
2,303,664 + HP15_2188 0.14 -5.8
2,304,350 - HP15_2188 0.45 -5.1
2,304,394 + HP15_2188 0.47 -2.4
2,304,778 - HP15_2188 0.65 -3.7
2,305,115 + HP15_2188 0.80 -5.4
2,305,145 - HP15_2188 0.81 -5.7
2,305,252 + HP15_2188 0.86 -2.9
2,305,565 + -0.3

Or see this region's nucleotide sequence