Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1604 and HP15_1605 are separated by 6 nucleotides HP15_1605 and HP15_1606 overlap by 4 nucleotides HP15_1606 and HP15_1607 are separated by 59 nucleotides HP15_1607 and HP15_1608 are separated by 6 nucleotides
HP15_1604: HP15_1604 - general secretion pathway protein G, at 1,701,667 to 1,702,119
_1604
HP15_1605: HP15_1605 - general secretion pathway protein H, at 1,702,126 to 1,702,656
_1605
HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027
_1606
HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803
_1607
HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814
_1608
Position (kb)
1703
1704 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1702.122 kb on - strand at 1702.122 kb on - strand at 1702.144 kb on - strand at 1702.169 kb on - strand at 1702.280 kb on - strand, within HP15_1605 at 1702.289 kb on - strand, within HP15_1605 at 1702.500 kb on + strand, within HP15_1605 at 1702.612 kb on - strand at 1702.883 kb on + strand, within HP15_1606 at 1703.335 kb on - strand, within HP15_1607 at 1703.374 kb on - strand, within HP15_1607 at 1703.394 kb on - strand, within HP15_1607 at 1703.649 kb on + strand, within HP15_1607 at 1703.690 kb on + strand, within HP15_1607 at 1703.762 kb on - strand at 1703.819 kb on + strand at 1704.070 kb on + strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.147 kb on - strand, within HP15_1608 at 1704.351 kb on - strand, within HP15_1608 at 1704.537 kb on - strand, within HP15_1608 at 1704.563 kb on + strand, within HP15_1608
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 1,702,122 - +1.2 1,702,122 - -3.1 1,702,144 - -1.6 1,702,169 - -0.4 1,702,280 - HP15_1605 0.29 -1.9 1,702,289 - HP15_1605 0.31 -1.2 1,702,500 + HP15_1605 0.70 -1.6 1,702,612 - -1.1 1,702,883 + HP15_1606 0.61 +0.5 1,703,335 - HP15_1607 0.35 -0.6 1,703,374 - HP15_1607 0.40 -0.9 1,703,394 - HP15_1607 0.43 -0.6 1,703,649 + HP15_1607 0.78 -0.6 1,703,690 + HP15_1607 0.84 -0.3 1,703,762 - -1.1 1,703,819 + -0.9 1,704,070 + HP15_1608 0.26 -0.7 1,704,078 - HP15_1608 0.27 -1.0 1,704,078 - HP15_1608 0.27 -0.4 1,704,147 - HP15_1608 0.34 -1.5 1,704,351 - HP15_1608 0.54 -1.5 1,704,537 - HP15_1608 0.72 -2.1 1,704,563 + HP15_1608 0.75 -1.0
Or see this region's nucleotide sequence