Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1570 and HP15_1571 are separated by 2 nucleotides HP15_1571 and HP15_1572 overlap by 4 nucleotides HP15_1572 and HP15_tRNA31 are separated by 224 nucleotides HP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotides HP15_tRNA32 and HP15_1573 are separated by 168 nucleotides
HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592
_1570
HP15_1571: HP15_1571 - ATP-binding component of ABC transporter, at 1,651,595 to 1,652,434
_1571
HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597
_1572
HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897
_tRNA31
HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031
_tRNA32
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1651.432 kb on + strand, within HP15_1570 at 1651.440 kb on - strand, within HP15_1570 at 1651.571 kb on + strand at 1651.671 kb on - strand at 1651.739 kb on - strand, within HP15_1571 at 1651.786 kb on + strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.823 kb on + strand, within HP15_1571 at 1651.876 kb on + strand, within HP15_1571 at 1652.016 kb on + strand, within HP15_1571 at 1652.106 kb on + strand, within HP15_1571 at 1652.129 kb on + strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.327 kb on + strand, within HP15_1571 at 1652.460 kb on - strand at 1652.494 kb on + strand at 1652.523 kb on + strand at 1652.665 kb on - strand, within HP15_1572 at 1652.665 kb on - strand, within HP15_1572 at 1652.675 kb on + strand, within HP15_1572 at 1652.675 kb on + strand, within HP15_1572 at 1652.713 kb on - strand, within HP15_1572 at 1652.808 kb on + strand, within HP15_1572 at 1652.809 kb on - strand, within HP15_1572 at 1652.844 kb on + strand, within HP15_1572 at 1652.996 kb on - strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.231 kb on + strand, within HP15_1572 at 1653.530 kb on - strand at 1653.582 kb on + strand at 1653.582 kb on + strand at 1653.590 kb on - strand at 1653.646 kb on - strand at 1654.562 kb on + strand, within HP15_1573 at 1654.562 kb on + strand, within HP15_1573 at 1654.582 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 1,651,432 + HP15_1570 0.83 +1.2 1,651,440 - HP15_1570 0.84 -0.2 1,651,571 + -0.1 1,651,671 - +0.7 1,651,739 - HP15_1571 0.17 -0.0 1,651,786 + HP15_1571 0.23 +0.2 1,651,794 - HP15_1571 0.24 +0.3 1,651,794 - HP15_1571 0.24 +0.9 1,651,823 + HP15_1571 0.27 -0.2 1,651,876 + HP15_1571 0.33 +0.9 1,652,016 + HP15_1571 0.50 -0.4 1,652,106 + HP15_1571 0.61 -0.0 1,652,129 + HP15_1571 0.64 +0.4 1,652,152 - HP15_1571 0.66 -0.8 1,652,152 - HP15_1571 0.66 -0.6 1,652,327 + HP15_1571 0.87 +0.7 1,652,460 - +0.7 1,652,494 + -0.4 1,652,523 + -0.3 1,652,665 - HP15_1572 0.20 +0.0 1,652,665 - HP15_1572 0.20 -0.5 1,652,675 + HP15_1572 0.21 +0.7 1,652,675 + HP15_1572 0.21 +0.5 1,652,713 - HP15_1572 0.24 +1.8 1,652,808 + HP15_1572 0.32 +0.5 1,652,809 - HP15_1572 0.32 -0.7 1,652,844 + HP15_1572 0.35 -0.1 1,652,996 - HP15_1572 0.48 +0.8 1,653,121 + HP15_1572 0.59 +0.7 1,653,121 + HP15_1572 0.59 +1.3 1,653,231 + HP15_1572 0.69 -3.0 1,653,530 - -0.8 1,653,582 + -0.7 1,653,582 + +0.2 1,653,590 - +0.0 1,653,646 - -0.3 1,654,562 + HP15_1573 0.21 -0.2 1,654,562 + HP15_1573 0.21 +0.6 1,654,582 + HP15_1573 0.22 +0.7 1,654,593 + HP15_1573 0.23 -0.4 1,654,593 + HP15_1573 0.23 +1.5
Or see this region's nucleotide sequence