Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1293 and HP15_1294 are separated by 280 nucleotides HP15_1294 and HP15_1295 overlap by 4 nucleotides HP15_1295 and HP15_1296 are separated by 74 nucleotides
HP15_1293: HP15_1293 - iron sulfur binding protein, at 1,353,869 to 1,355,008
_1293
HP15_1294: HP15_1294 - deoxycytidine triphosphate deaminase, at 1,355,289 to 1,355,855
_1294
HP15_1295: HP15_1295 - protein containing DUF416, at 1,355,852 to 1,356,451
_1295
HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803
_1296
Position (kb)
1355
1356
1357 Strain fitness (log2 ratio)
-2
-1
0
1 at 1354.886 kb on + strand, within HP15_1293 at 1354.941 kb on - strand at 1354.946 kb on - strand at 1354.946 kb on - strand at 1354.967 kb on - strand at 1355.062 kb on - strand at 1355.062 kb on - strand at 1355.094 kb on - strand at 1355.115 kb on - strand at 1356.161 kb on + strand, within HP15_1295 at 1356.180 kb on + strand, within HP15_1295 at 1356.188 kb on - strand, within HP15_1295 at 1356.427 kb on + strand at 1356.460 kb on - strand at 1356.490 kb on - strand at 1356.496 kb on + strand at 1356.501 kb on + strand at 1356.602 kb on - strand at 1356.664 kb on + strand, within HP15_1296 at 1356.973 kb on + strand, within HP15_1296 at 1356.978 kb on + strand, within HP15_1296 at 1356.981 kb on - strand, within HP15_1296 at 1356.986 kb on - strand, within HP15_1296
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 1,354,886 + HP15_1293 0.89 +0.6 1,354,941 - -0.7 1,354,946 - +1.1 1,354,946 - +0.9 1,354,967 - +0.6 1,355,062 - -0.4 1,355,062 - +0.6 1,355,094 - +0.3 1,355,115 - -2.0 1,356,161 + HP15_1295 0.52 +1.1 1,356,180 + HP15_1295 0.55 -0.2 1,356,188 - HP15_1295 0.56 +0.2 1,356,427 + -0.9 1,356,460 - -0.9 1,356,490 - -0.1 1,356,496 + +0.8 1,356,501 + +0.8 1,356,602 - +0.2 1,356,664 + HP15_1296 0.11 +0.8 1,356,973 + HP15_1296 0.35 +0.1 1,356,978 + HP15_1296 0.35 +0.5 1,356,981 - HP15_1296 0.36 +0.8 1,356,986 - HP15_1296 0.36 +1.0
Or see this region's nucleotide sequence