Strain Fitness in Marinobacter adhaerens HP15 around HP15_1257

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1255 and HP15_1256 are separated by 63 nucleotidesHP15_1256 and HP15_1257 are separated by 80 nucleotidesHP15_1257 and HP15_1258 are separated by 1 nucleotides HP15_1255: HP15_1255 - protein containing Smr protein/MutS2 C-terminal domain, at 1,315,784 to 1,316,365 _1255 HP15_1256: HP15_1256 - conserved hypothetical protein, at 1,316,429 to 1,316,620 _1256 HP15_1257: HP15_1257 - (2Fe-2S)-binding domain protein, at 1,316,701 to 1,317,186 _1257 HP15_1258: HP15_1258 - isoquinoline 1-oxidoreductase, beta subunit, at 1,317,188 to 1,319,392 _1258 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -3 -2 -1 0 1at 1315.919 kb on + strand, within HP15_1255at 1315.988 kb on + strand, within HP15_1255at 1315.996 kb on - strand, within HP15_1255at 1316.072 kb on + strand, within HP15_1255at 1316.075 kb on - strand, within HP15_1255at 1316.080 kb on + strand, within HP15_1255at 1316.080 kb on - strand, within HP15_1255at 1316.088 kb on + strand, within HP15_1255at 1316.096 kb on - strand, within HP15_1255at 1316.096 kb on - strand, within HP15_1255at 1316.113 kb on + strand, within HP15_1255at 1316.182 kb on + strand, within HP15_1255at 1316.187 kb on + strand, within HP15_1255at 1316.239 kb on + strand, within HP15_1255at 1316.249 kb on + strand, within HP15_1255at 1316.356 kb on - strandat 1316.360 kb on + strandat 1316.368 kb on - strandat 1316.513 kb on + strand, within HP15_1256at 1316.560 kb on + strand, within HP15_1256at 1316.581 kb on + strand, within HP15_1256at 1316.627 kb on + strandat 1316.693 kb on + strandat 1316.837 kb on - strand, within HP15_1257at 1316.876 kb on + strand, within HP15_1257at 1317.015 kb on + strand, within HP15_1257at 1317.018 kb on - strand, within HP15_1257at 1317.222 kb on + strandat 1317.224 kb on + strandat 1317.296 kb on - strandat 1317.362 kb on + strandat 1317.363 kb on + strandat 1317.409 kb on - strand, within HP15_1258at 1317.548 kb on - strand, within HP15_1258at 1317.646 kb on - strand, within HP15_1258at 1317.911 kb on + strand, within HP15_1258at 1317.911 kb on + strand, within HP15_1258at 1317.919 kb on - strand, within HP15_1258at 1317.954 kb on - strand, within HP15_1258at 1318.075 kb on - strand, within HP15_1258at 1318.186 kb on + strand, within HP15_1258

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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1,315,919 + HP15_1255 0.23 -0.4
1,315,988 + HP15_1255 0.35 +1.1
1,315,996 - HP15_1255 0.36 -1.9
1,316,072 + HP15_1255 0.49 +1.4
1,316,075 - HP15_1255 0.50 +1.3
1,316,080 + HP15_1255 0.51 -0.2
1,316,080 - HP15_1255 0.51 +0.7
1,316,088 + HP15_1255 0.52 +0.6
1,316,096 - HP15_1255 0.54 +0.2
1,316,096 - HP15_1255 0.54 -1.0
1,316,113 + HP15_1255 0.57 -1.4
1,316,182 + HP15_1255 0.68 -1.8
1,316,187 + HP15_1255 0.69 +0.9
1,316,239 + HP15_1255 0.78 +0.9
1,316,249 + HP15_1255 0.80 +0.5
1,316,356 - -0.2
1,316,360 + -0.6
1,316,368 - -0.1
1,316,513 + HP15_1256 0.44 -2.8
1,316,560 + HP15_1256 0.68 +0.6
1,316,581 + HP15_1256 0.79 +0.0
1,316,627 + -0.7
1,316,693 + -0.1
1,316,837 - HP15_1257 0.28 +0.5
1,316,876 + HP15_1257 0.36 -0.7
1,317,015 + HP15_1257 0.65 -1.6
1,317,018 - HP15_1257 0.65 -0.2
1,317,222 + +0.6
1,317,224 + -2.7
1,317,296 - +0.2
1,317,362 + -0.2
1,317,363 + +1.4
1,317,409 - HP15_1258 0.10 +0.6
1,317,548 - HP15_1258 0.16 +0.1
1,317,646 - HP15_1258 0.21 +1.3
1,317,911 + HP15_1258 0.33 +0.6
1,317,911 + HP15_1258 0.33 +0.7
1,317,919 - HP15_1258 0.33 -0.6
1,317,954 - HP15_1258 0.35 +0.8
1,318,075 - HP15_1258 0.40 +0.8
1,318,186 + HP15_1258 0.45 -1.0

Or see this region's nucleotide sequence