Strain Fitness in Marinobacter adhaerens HP15 around HP15_1245

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1242 and HP15_1243 are separated by 2 nucleotidesHP15_1243 and HP15_1244 overlap by 4 nucleotidesHP15_1244 and HP15_1245 are separated by 18 nucleotidesHP15_1245 and HP15_1246 are separated by 165 nucleotidesHP15_1246 and HP15_rRNA7 are separated by 208 nucleotides HP15_1242: HP15_1242 - MutT/nudix family protein, at 1,295,783 to 1,296,370 _1242 HP15_1243: HP15_1243 - transferase hexapeptide repeat containing protein, at 1,296,373 to 1,296,906 _1243 HP15_1244: HP15_1244 - protein containing DUF1289, at 1,296,903 to 1,297,091 _1244 HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300 _1245 HP15_1246: HP15_1246 - hypothetical protein, at 1,298,466 to 1,298,612 _1246 HP15_rRNA7: HP15_rRNA7 - 16S ribosomal RNA, at 1,298,821 to 1,300,352 _rRNA7 Position (kb) 1297 1298 1299Strain fitness (log2 ratio) -3 -2 -1 0 1at 1296.137 kb on - strand, within HP15_1242at 1296.355 kb on + strandat 1296.363 kb on - strandat 1296.445 kb on + strand, within HP15_1243at 1296.453 kb on - strand, within HP15_1243at 1296.494 kb on - strand, within HP15_1243at 1296.554 kb on + strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.576 kb on + strand, within HP15_1243at 1296.592 kb on - strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.620 kb on + strand, within HP15_1243at 1296.687 kb on - strand, within HP15_1243at 1296.689 kb on + strand, within HP15_1243at 1296.751 kb on - strand, within HP15_1243at 1296.769 kb on - strand, within HP15_1243at 1296.843 kb on + strand, within HP15_1243at 1296.877 kb on - strandat 1296.897 kb on + strandat 1296.938 kb on + strand, within HP15_1244at 1297.147 kb on - strandat 1297.153 kb on - strandat 1297.317 kb on - strand, within HP15_1245at 1297.332 kb on - strand, within HP15_1245at 1297.509 kb on + strand, within HP15_1245at 1297.566 kb on - strand, within HP15_1245at 1297.608 kb on + strand, within HP15_1245at 1297.615 kb on + strand, within HP15_1245at 1297.678 kb on + strand, within HP15_1245at 1297.685 kb on + strand, within HP15_1245at 1297.734 kb on - strand, within HP15_1245at 1297.744 kb on - strand, within HP15_1245at 1297.751 kb on + strand, within HP15_1245at 1297.920 kb on - strand, within HP15_1245at 1297.975 kb on + strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.993 kb on - strand, within HP15_1245at 1298.007 kb on - strand, within HP15_1245at 1298.051 kb on - strand, within HP15_1245at 1298.148 kb on - strand, within HP15_1245at 1298.287 kb on + strandat 1298.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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1,296,137 - HP15_1242 0.60 -1.1
1,296,355 + -1.1
1,296,363 - -0.2
1,296,445 + HP15_1243 0.13 +0.2
1,296,453 - HP15_1243 0.15 +0.5
1,296,494 - HP15_1243 0.23 -1.1
1,296,554 + HP15_1243 0.34 -1.5
1,296,562 - HP15_1243 0.35 -0.0
1,296,562 - HP15_1243 0.35 +0.4
1,296,562 - HP15_1243 0.35 -0.4
1,296,576 + HP15_1243 0.38 +1.4
1,296,592 - HP15_1243 0.41 -0.5
1,296,594 + HP15_1243 0.41 -0.3
1,296,594 + HP15_1243 0.41 +1.1
1,296,594 + HP15_1243 0.41 -0.7
1,296,594 + HP15_1243 0.41 -1.3
1,296,594 + HP15_1243 0.41 +0.0
1,296,594 + HP15_1243 0.41 +0.2
1,296,594 + HP15_1243 0.41 -2.2
1,296,594 + HP15_1243 0.41 +0.8
1,296,602 - HP15_1243 0.43 -3.3
1,296,602 - HP15_1243 0.43 -0.6
1,296,602 - HP15_1243 0.43 +0.0
1,296,620 + HP15_1243 0.46 -0.4
1,296,687 - HP15_1243 0.59 +0.2
1,296,689 + HP15_1243 0.59 -1.4
1,296,751 - HP15_1243 0.71 -0.6
1,296,769 - HP15_1243 0.74 -0.4
1,296,843 + HP15_1243 0.88 -0.2
1,296,877 - -0.4
1,296,897 + +0.3
1,296,938 + HP15_1244 0.19 +1.0
1,297,147 - -0.6
1,297,153 - -1.0
1,297,317 - HP15_1245 0.17 -1.1
1,297,332 - HP15_1245 0.19 +0.1
1,297,509 + HP15_1245 0.34 -1.7
1,297,566 - HP15_1245 0.38 +0.1
1,297,608 + HP15_1245 0.42 +0.4
1,297,615 + HP15_1245 0.42 -0.3
1,297,678 + HP15_1245 0.48 +0.2
1,297,685 + HP15_1245 0.48 -0.2
1,297,734 - HP15_1245 0.52 -1.6
1,297,744 - HP15_1245 0.53 -1.0
1,297,751 + HP15_1245 0.54 -0.2
1,297,920 - HP15_1245 0.68 -0.5
1,297,975 + HP15_1245 0.73 +0.6
1,297,983 - HP15_1245 0.73 +0.0
1,297,983 - HP15_1245 0.73 -0.5
1,297,993 - HP15_1245 0.74 -0.9
1,298,007 - HP15_1245 0.75 -1.2
1,298,051 - HP15_1245 0.79 +0.8
1,298,148 - HP15_1245 0.87 -0.1
1,298,287 + -0.0
1,298,305 + -0.3

Or see this region's nucleotide sequence