Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1242 and HP15_1243 are separated by 2 nucleotides HP15_1243 and HP15_1244 overlap by 4 nucleotides HP15_1244 and HP15_1245 are separated by 18 nucleotides
HP15_1242: HP15_1242 - MutT/nudix family protein, at 1,295,783 to 1,296,370
_1242
HP15_1243: HP15_1243 - transferase hexapeptide repeat containing protein, at 1,296,373 to 1,296,906
_1243
HP15_1244: HP15_1244 - protein containing DUF1289, at 1,296,903 to 1,297,091
_1244
HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300
_1245
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1296.070 kb on + strand, within HP15_1242 at 1296.078 kb on - strand, within HP15_1242 at 1296.137 kb on - strand, within HP15_1242 at 1296.355 kb on + strand at 1296.363 kb on - strand at 1296.445 kb on + strand, within HP15_1243 at 1296.453 kb on - strand, within HP15_1243 at 1296.494 kb on - strand, within HP15_1243 at 1296.554 kb on + strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.576 kb on + strand, within HP15_1243 at 1296.592 kb on - strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.620 kb on + strand, within HP15_1243 at 1296.687 kb on - strand, within HP15_1243 at 1296.689 kb on + strand, within HP15_1243 at 1296.751 kb on - strand, within HP15_1243 at 1296.769 kb on - strand, within HP15_1243 at 1296.843 kb on + strand, within HP15_1243 at 1296.877 kb on - strand at 1296.897 kb on + strand at 1296.938 kb on + strand, within HP15_1244 at 1297.147 kb on - strand at 1297.153 kb on - strand at 1297.317 kb on - strand, within HP15_1245 at 1297.332 kb on - strand, within HP15_1245 at 1297.509 kb on + strand, within HP15_1245 at 1297.566 kb on - strand, within HP15_1245 at 1297.608 kb on + strand, within HP15_1245 at 1297.615 kb on + strand, within HP15_1245 at 1297.678 kb on + strand, within HP15_1245 at 1297.685 kb on + strand, within HP15_1245 at 1297.734 kb on - strand, within HP15_1245 at 1297.744 kb on - strand, within HP15_1245 at 1297.751 kb on + strand, within HP15_1245 at 1297.920 kb on - strand, within HP15_1245 at 1297.975 kb on + strand, within HP15_1245 at 1297.983 kb on - strand, within HP15_1245 at 1297.983 kb on - strand, within HP15_1245 at 1297.993 kb on - strand, within HP15_1245 at 1298.007 kb on - strand, within HP15_1245 at 1298.051 kb on - strand, within HP15_1245
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 1,296,070 + HP15_1242 0.49 +0.8 1,296,078 - HP15_1242 0.50 -1.8 1,296,137 - HP15_1242 0.60 -1.1 1,296,355 + -1.1 1,296,363 - -0.2 1,296,445 + HP15_1243 0.13 +0.2 1,296,453 - HP15_1243 0.15 +0.5 1,296,494 - HP15_1243 0.23 -1.1 1,296,554 + HP15_1243 0.34 -1.5 1,296,562 - HP15_1243 0.35 -0.0 1,296,562 - HP15_1243 0.35 +0.4 1,296,562 - HP15_1243 0.35 -0.4 1,296,576 + HP15_1243 0.38 +1.4 1,296,592 - HP15_1243 0.41 -0.5 1,296,594 + HP15_1243 0.41 -0.3 1,296,594 + HP15_1243 0.41 +1.1 1,296,594 + HP15_1243 0.41 -0.7 1,296,594 + HP15_1243 0.41 -1.3 1,296,594 + HP15_1243 0.41 +0.0 1,296,594 + HP15_1243 0.41 +0.2 1,296,594 + HP15_1243 0.41 -2.2 1,296,594 + HP15_1243 0.41 +0.8 1,296,602 - HP15_1243 0.43 -3.3 1,296,602 - HP15_1243 0.43 -0.6 1,296,602 - HP15_1243 0.43 +0.0 1,296,620 + HP15_1243 0.46 -0.4 1,296,687 - HP15_1243 0.59 +0.2 1,296,689 + HP15_1243 0.59 -1.4 1,296,751 - HP15_1243 0.71 -0.6 1,296,769 - HP15_1243 0.74 -0.4 1,296,843 + HP15_1243 0.88 -0.2 1,296,877 - -0.4 1,296,897 + +0.3 1,296,938 + HP15_1244 0.19 +1.0 1,297,147 - -0.6 1,297,153 - -1.0 1,297,317 - HP15_1245 0.17 -1.1 1,297,332 - HP15_1245 0.19 +0.1 1,297,509 + HP15_1245 0.34 -1.7 1,297,566 - HP15_1245 0.38 +0.1 1,297,608 + HP15_1245 0.42 +0.4 1,297,615 + HP15_1245 0.42 -0.3 1,297,678 + HP15_1245 0.48 +0.2 1,297,685 + HP15_1245 0.48 -0.2 1,297,734 - HP15_1245 0.52 -1.6 1,297,744 - HP15_1245 0.53 -1.0 1,297,751 + HP15_1245 0.54 -0.2 1,297,920 - HP15_1245 0.68 -0.5 1,297,975 + HP15_1245 0.73 +0.6 1,297,983 - HP15_1245 0.73 +0.0 1,297,983 - HP15_1245 0.73 -0.5 1,297,993 - HP15_1245 0.74 -0.9 1,298,007 - HP15_1245 0.75 -1.2 1,298,051 - HP15_1245 0.79 +0.8
Or see this region's nucleotide sequence