Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g152 and HP15_p187g153 are separated by 553 nucleotides HP15_p187g153 and HP15_p187g154 are separated by 209 nucleotides HP15_p187g154 and HP15_p187g155 are separated by 104 nucleotides
HP15_p187g152: HP15_p187g152 - hypothetical protein, at 153,407 to 154,279
_p187g152
HP15_p187g153: HP15_p187g153 - hypothetical protein, at 154,833 to 155,483
_p187g153
HP15_p187g154: HP15_p187g154 - hypothetical protein, at 155,693 to 155,833
_p187g154
HP15_p187g155: HP15_p187g155 - amidohydrolase, at 155,938 to 157,410
_p187g155
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.876 kb on + strand, within HP15_p187g152 at 153.926 kb on + strand, within HP15_p187g152 at 153.983 kb on + strand, within HP15_p187g152 at 153.986 kb on - strand, within HP15_p187g152 at 153.991 kb on + strand, within HP15_p187g152 at 153.991 kb on + strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.999 kb on - strand, within HP15_p187g152 at 153.999 kb on - strand, within HP15_p187g152 at 154.009 kb on + strand, within HP15_p187g152 at 154.090 kb on + strand, within HP15_p187g152 at 154.095 kb on + strand, within HP15_p187g152 at 154.098 kb on - strand, within HP15_p187g152 at 154.103 kb on - strand, within HP15_p187g152 at 154.110 kb on - strand, within HP15_p187g152 at 154.124 kb on + strand, within HP15_p187g152 at 154.124 kb on + strand, within HP15_p187g152 at 154.132 kb on - strand, within HP15_p187g152 at 154.137 kb on - strand, within HP15_p187g152 at 154.156 kb on + strand, within HP15_p187g152 at 154.156 kb on - strand, within HP15_p187g152 at 154.163 kb on + strand, within HP15_p187g152 at 154.195 kb on + strand at 154.240 kb on - strand at 154.267 kb on + strand at 154.349 kb on + strand at 154.357 kb on - strand at 154.357 kb on - strand at 154.440 kb on + strand at 154.440 kb on + strand at 154.440 kb on + strand at 154.446 kb on - strand at 154.450 kb on + strand at 154.450 kb on - strand at 154.453 kb on - strand at 154.513 kb on + strand at 154.514 kb on - strand at 154.514 kb on - strand at 154.514 kb on - strand at 154.533 kb on - strand at 154.540 kb on + strand at 154.558 kb on + strand at 154.604 kb on - strand at 154.668 kb on - strand at 154.676 kb on - strand at 154.699 kb on + strand at 154.714 kb on - strand at 154.921 kb on + strand, within HP15_p187g153 at 154.921 kb on + strand, within HP15_p187g153 at 154.929 kb on - strand, within HP15_p187g153 at 154.929 kb on - strand, within HP15_p187g153 at 154.943 kb on + strand, within HP15_p187g153 at 154.943 kb on + strand, within HP15_p187g153 at 154.955 kb on + strand, within HP15_p187g153 at 154.995 kb on - strand, within HP15_p187g153 at 155.065 kb on + strand, within HP15_p187g153 at 155.073 kb on - strand, within HP15_p187g153 at 155.073 kb on - strand, within HP15_p187g153 at 155.122 kb on - strand, within HP15_p187g153 at 155.133 kb on + strand, within HP15_p187g153 at 155.220 kb on - strand, within HP15_p187g153 at 155.269 kb on + strand, within HP15_p187g153 at 155.275 kb on - strand, within HP15_p187g153 at 155.277 kb on - strand, within HP15_p187g153 at 155.339 kb on + strand at 155.339 kb on + strand, within HP15_p187g153 at 155.339 kb on + strand, within HP15_p187g153 at 155.339 kb on + strand, within HP15_p187g153 at 155.347 kb on - strand, within HP15_p187g153 at 155.478 kb on + strand at 155.478 kb on + strand at 155.494 kb on + strand at 155.519 kb on - strand at 155.552 kb on + strand at 155.557 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.573 kb on + strand at 155.578 kb on + strand at 155.586 kb on - strand at 155.586 kb on - strand at 155.644 kb on - strand at 155.675 kb on - strand at 155.678 kb on + strand at 155.678 kb on + strand at 155.686 kb on - strand at 155.690 kb on + strand at 155.703 kb on - strand at 155.740 kb on + strand, within HP15_p187g154 at 155.804 kb on + strand, within HP15_p187g154 at 155.804 kb on + strand, within HP15_p187g154 at 155.817 kb on - strand, within HP15_p187g154 at 155.903 kb on - strand at 155.912 kb on + strand at 155.920 kb on + strand at 155.927 kb on + strand at 155.937 kb on + strand at 155.945 kb on - strand at 156.021 kb on + strand at 156.029 kb on - strand at 156.049 kb on - strand at 156.069 kb on + strand at 156.073 kb on - strand at 156.077 kb on - strand at 156.087 kb on + strand, within HP15_p187g155 at 156.105 kb on + strand, within HP15_p187g155 at 156.130 kb on + strand, within HP15_p187g155 at 156.130 kb on + strand, within HP15_p187g155 at 156.182 kb on + strand, within HP15_p187g155 at 156.216 kb on + strand, within HP15_p187g155 at 156.224 kb on - strand, within HP15_p187g155 at 156.226 kb on + strand, within HP15_p187g155 at 156.234 kb on - strand, within HP15_p187g155 at 156.234 kb on - strand, within HP15_p187g155 at 156.239 kb on - strand, within HP15_p187g155 at 156.338 kb on + strand, within HP15_p187g155 at 156.346 kb on - strand, within HP15_p187g155 at 156.380 kb on - strand, within HP15_p187g155 at 156.382 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.462 kb on + strand, within HP15_p187g155 at 156.470 kb on - strand, within HP15_p187g155 at 156.472 kb on + strand, within HP15_p187g155 at 156.482 kb on + strand, within HP15_p187g155 at 156.482 kb on - strand, within HP15_p187g155
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 153,876 + HP15_p187g152 0.54 +0.6 153,926 + HP15_p187g152 0.59 +0.5 153,983 + HP15_p187g152 0.66 -0.3 153,986 - HP15_p187g152 0.66 -2.0 153,991 + HP15_p187g152 0.67 +0.5 153,991 + HP15_p187g152 0.67 +0.3 153,991 - HP15_p187g152 0.67 +0.3 153,991 - HP15_p187g152 0.67 +1.5 153,991 - HP15_p187g152 0.67 +1.4 153,999 - HP15_p187g152 0.68 +0.3 153,999 - HP15_p187g152 0.68 +0.5 154,009 + HP15_p187g152 0.69 +1.0 154,090 + HP15_p187g152 0.78 +0.7 154,095 + HP15_p187g152 0.79 +0.5 154,098 - HP15_p187g152 0.79 -0.7 154,103 - HP15_p187g152 0.80 +1.0 154,110 - HP15_p187g152 0.81 +0.0 154,124 + HP15_p187g152 0.82 +0.7 154,124 + HP15_p187g152 0.82 -1.5 154,132 - HP15_p187g152 0.83 +0.8 154,137 - HP15_p187g152 0.84 -3.0 154,156 + HP15_p187g152 0.86 +1.6 154,156 - HP15_p187g152 0.86 -1.1 154,163 + HP15_p187g152 0.87 -1.8 154,195 + +0.8 154,240 - -0.7 154,267 + -0.9 154,349 + -0.2 154,357 - +1.0 154,357 - -0.6 154,440 + -0.0 154,440 + +0.1 154,440 + -0.1 154,446 - -0.5 154,450 + -1.6 154,450 - -0.1 154,453 - +0.7 154,513 + -1.0 154,514 - +0.8 154,514 - +0.2 154,514 - +0.1 154,533 - -0.9 154,540 + +0.1 154,558 + +0.6 154,604 - -0.2 154,668 - +0.0 154,676 - -0.6 154,699 + -0.5 154,714 - -0.0 154,921 + HP15_p187g153 0.14 -2.1 154,921 + HP15_p187g153 0.14 -0.6 154,929 - HP15_p187g153 0.15 -1.1 154,929 - HP15_p187g153 0.15 -0.3 154,943 + HP15_p187g153 0.17 +0.4 154,943 + HP15_p187g153 0.17 -2.1 154,955 + HP15_p187g153 0.19 -0.2 154,995 - HP15_p187g153 0.25 +0.5 155,065 + HP15_p187g153 0.36 -0.2 155,073 - HP15_p187g153 0.37 -1.2 155,073 - HP15_p187g153 0.37 +0.1 155,122 - HP15_p187g153 0.44 -1.7 155,133 + HP15_p187g153 0.46 +0.7 155,220 - HP15_p187g153 0.59 +0.1 155,269 + HP15_p187g153 0.67 +0.6 155,275 - HP15_p187g153 0.68 -0.9 155,277 - HP15_p187g153 0.68 +1.0 155,339 + -0.7 155,339 + HP15_p187g153 0.78 -0.3 155,339 + HP15_p187g153 0.78 -0.2 155,339 + HP15_p187g153 0.78 +1.3 155,347 - HP15_p187g153 0.79 -1.9 155,478 + +0.7 155,478 + +0.2 155,494 + -1.5 155,519 - -1.0 155,552 + -0.2 155,557 + +0.6 155,559 + -0.6 155,559 + +1.0 155,559 + +0.2 155,559 + -0.3 155,560 - -0.7 155,560 - -0.6 155,560 - +0.3 155,560 - -0.8 155,567 - -1.2 155,567 - -1.0 155,567 - -0.6 155,567 - +1.0 155,567 - -0.3 155,567 - -1.4 155,567 - -0.3 155,567 - -0.2 155,573 + +0.1 155,578 + +0.2 155,586 - +0.1 155,586 - +0.6 155,644 - +1.7 155,675 - +0.6 155,678 + +1.8 155,678 + +0.7 155,686 - +1.4 155,690 + -0.9 155,703 - -1.3 155,740 + HP15_p187g154 0.33 +1.5 155,804 + HP15_p187g154 0.79 -0.0 155,804 + HP15_p187g154 0.79 +0.5 155,817 - HP15_p187g154 0.88 -0.2 155,903 - +0.1 155,912 + -0.5 155,920 + +0.9 155,927 + +0.2 155,937 + +0.4 155,945 - +1.4 156,021 + +0.6 156,029 - +0.0 156,049 - -1.6 156,069 + +0.6 156,073 - +1.3 156,077 - -0.0 156,087 + HP15_p187g155 0.10 -1.6 156,105 + HP15_p187g155 0.11 -0.8 156,130 + HP15_p187g155 0.13 -1.3 156,130 + HP15_p187g155 0.13 +1.0 156,182 + HP15_p187g155 0.17 -2.2 156,216 + HP15_p187g155 0.19 -1.6 156,224 - HP15_p187g155 0.19 -0.4 156,226 + HP15_p187g155 0.20 +0.4 156,234 - HP15_p187g155 0.20 -0.0 156,234 - HP15_p187g155 0.20 +1.5 156,239 - HP15_p187g155 0.20 +0.4 156,338 + HP15_p187g155 0.27 -0.8 156,346 - HP15_p187g155 0.28 +0.3 156,380 - HP15_p187g155 0.30 +0.2 156,382 + HP15_p187g155 0.30 -1.4 156,451 + HP15_p187g155 0.35 -0.2 156,451 + HP15_p187g155 0.35 +1.1 156,451 + HP15_p187g155 0.35 -0.4 156,451 + HP15_p187g155 0.35 -0.9 156,462 + HP15_p187g155 0.36 +0.0 156,470 - HP15_p187g155 0.36 -0.6 156,472 + HP15_p187g155 0.36 -0.1 156,482 + HP15_p187g155 0.37 +0.2 156,482 - HP15_p187g155 0.37 -1.3
Or see this region's nucleotide sequence