Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3487 and HP15_3488 are separated by 190 nucleotides HP15_3488 and HP15_3489 overlap by 11 nucleotides HP15_3489 and HP15_3490 are separated by 29 nucleotides
HP15_3487: HP15_3487 - RNA polymerase, sigma 32 subunit, RpoH, at 3,672,226 to 3,673,086
_3487
HP15_3488: HP15_3488 - cell division protein FtsX-like protein, at 3,673,277 to 3,674,284
_3488
HP15_3489: HP15_3489 - cell division ATP-binding protein FtsE, at 3,674,274 to 3,674,966
_3489
HP15_3490: HP15_3490 - signal recognition particle-docking protein FtsY, at 3,674,996 to 3,676,189
_3490
Position (kb)
3673
3674
3675 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3673.088 kb on + strand at 3673.342 kb on + strand at 3673.350 kb on - strand at 3673.455 kb on - strand, within HP15_3488 at 3673.545 kb on - strand, within HP15_3488 at 3673.626 kb on + strand, within HP15_3488 at 3673.675 kb on + strand, within HP15_3488 at 3673.678 kb on + strand, within HP15_3488 at 3673.727 kb on + strand, within HP15_3488 at 3673.727 kb on + strand, within HP15_3488 at 3673.740 kb on - strand, within HP15_3488 at 3673.742 kb on + strand, within HP15_3488 at 3673.836 kb on + strand, within HP15_3488 at 3673.836 kb on + strand, within HP15_3488 at 3673.873 kb on - strand, within HP15_3488 at 3673.930 kb on + strand, within HP15_3488 at 3673.946 kb on - strand, within HP15_3488 at 3673.983 kb on - strand, within HP15_3488 at 3674.036 kb on + strand, within HP15_3488 at 3674.104 kb on - strand, within HP15_3488 at 3674.108 kb on + strand, within HP15_3488 at 3674.379 kb on + strand, within HP15_3489 at 3674.381 kb on + strand, within HP15_3489 at 3674.387 kb on - strand, within HP15_3489 at 3674.434 kb on + strand, within HP15_3489 at 3674.458 kb on + strand, within HP15_3489 at 3674.543 kb on - strand, within HP15_3489 at 3674.556 kb on - strand, within HP15_3489 at 3674.606 kb on - strand, within HP15_3489 at 3674.606 kb on - strand, within HP15_3489 at 3674.643 kb on + strand, within HP15_3489 at 3674.673 kb on + strand, within HP15_3489 at 3674.673 kb on + strand, within HP15_3489 at 3674.673 kb on + strand, within HP15_3489 at 3674.681 kb on - strand, within HP15_3489 at 3674.681 kb on - strand, within HP15_3489 at 3674.704 kb on - strand, within HP15_3489 at 3674.707 kb on - strand, within HP15_3489 at 3674.821 kb on - strand, within HP15_3489 at 3674.917 kb on - strand at 3674.919 kb on + strand at 3674.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 3,673,088 + -1.7 3,673,342 + -0.4 3,673,350 - +0.4 3,673,455 - HP15_3488 0.18 -0.3 3,673,545 - HP15_3488 0.27 +0.1 3,673,626 + HP15_3488 0.35 -1.0 3,673,675 + HP15_3488 0.39 -0.3 3,673,678 + HP15_3488 0.40 -0.2 3,673,727 + HP15_3488 0.45 -1.0 3,673,727 + HP15_3488 0.45 +0.6 3,673,740 - HP15_3488 0.46 -0.1 3,673,742 + HP15_3488 0.46 -1.0 3,673,836 + HP15_3488 0.55 -0.4 3,673,836 + HP15_3488 0.55 +0.6 3,673,873 - HP15_3488 0.59 -1.8 3,673,930 + HP15_3488 0.65 +1.0 3,673,946 - HP15_3488 0.66 -1.3 3,673,983 - HP15_3488 0.70 -0.3 3,674,036 + HP15_3488 0.75 -0.8 3,674,104 - HP15_3488 0.82 -0.8 3,674,108 + HP15_3488 0.82 +0.0 3,674,379 + HP15_3489 0.15 -0.2 3,674,381 + HP15_3489 0.15 +0.4 3,674,387 - HP15_3489 0.16 +0.1 3,674,434 + HP15_3489 0.23 -0.3 3,674,458 + HP15_3489 0.27 +0.9 3,674,543 - HP15_3489 0.39 -0.8 3,674,556 - HP15_3489 0.41 -2.1 3,674,606 - HP15_3489 0.48 -0.7 3,674,606 - HP15_3489 0.48 -0.8 3,674,643 + HP15_3489 0.53 -0.4 3,674,673 + HP15_3489 0.58 -1.6 3,674,673 + HP15_3489 0.58 -0.6 3,674,673 + HP15_3489 0.58 -0.9 3,674,681 - HP15_3489 0.59 +1.2 3,674,681 - HP15_3489 0.59 -2.4 3,674,704 - HP15_3489 0.62 +0.2 3,674,707 - HP15_3489 0.62 +1.8 3,674,821 - HP15_3489 0.79 +1.1 3,674,917 - -0.2 3,674,919 + -0.6 3,674,962 + -0.6
Or see this region's nucleotide sequence