Strain Fitness in Marinobacter adhaerens HP15 around HP15_321

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_319 and HP15_320 are separated by 95 nucleotidesHP15_320 and HP15_321 overlap by 4 nucleotidesHP15_321 and HP15_322 overlap by 18 nucleotides HP15_319: HP15_319 - predicted membrane protein, at 316,724 to 317,314 _319 HP15_320: HP15_320 - dihydroneopterin aldolase, at 317,410 to 317,811 _320 HP15_321: HP15_321 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 317,808 to 318,335 _321 HP15_322: HP15_322 - glucose-6-phosphate isomerase, at 318,318 to 319,979 _322 Position (kb) 317 318 319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 316.818 kb on - strand, within HP15_319at 316.959 kb on - strand, within HP15_319at 316.962 kb on + strand, within HP15_319at 317.041 kb on + strand, within HP15_319at 317.122 kb on + strand, within HP15_319at 317.194 kb on - strand, within HP15_319at 317.248 kb on + strand, within HP15_319at 317.390 kb on + strandat 317.803 kb on + strandat 317.878 kb on - strand, within HP15_321at 317.928 kb on + strand, within HP15_321at 318.116 kb on - strand, within HP15_321at 318.278 kb on + strand, within HP15_321at 318.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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316,818 - HP15_319 0.16 -0.9
316,959 - HP15_319 0.40 -0.8
316,962 + HP15_319 0.40 -0.2
317,041 + HP15_319 0.54 +0.2
317,122 + HP15_319 0.67 +0.6
317,194 - HP15_319 0.80 -0.6
317,248 + HP15_319 0.89 +0.7
317,390 + +1.5
317,803 + -1.9
317,878 - HP15_321 0.13 -4.1
317,928 + HP15_321 0.23 -4.3
318,116 - HP15_321 0.58 -4.1
318,278 + HP15_321 0.89 -2.1
318,291 + -1.7

Or see this region's nucleotide sequence