Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2672 and HP15_2673 overlap by 4 nucleotides HP15_2673 and HP15_2674 are separated by 59 nucleotides HP15_2674 and HP15_2675 are separated by 55 nucleotides HP15_2675 and HP15_2676 are separated by 146 nucleotides
HP15_2672: HP15_2672 - conserved hypothetical protein, at 2,820,835 to 2,823,030
_2672
HP15_2673: HP15_2673 - DedA, at 2,823,027 to 2,823,761
_2673
HP15_2674: HP15_2674 - conserved hypothetical protein, at 2,823,821 to 2,824,060
_2674
HP15_2675: HP15_2675 - pseudouridine synthase, Rsu, at 2,824,116 to 2,824,814
_2675
HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241
_2676
Position (kb)
2823
2824
2825 Strain fitness (log2 ratio)
-1
0
1
2 at 2822.882 kb on + strand at 2822.890 kb on - strand at 2822.912 kb on + strand at 2822.920 kb on - strand at 2822.997 kb on + strand at 2823.066 kb on - strand at 2823.108 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.185 kb on + strand, within HP15_2673 at 2823.193 kb on - strand, within HP15_2673 at 2823.229 kb on - strand, within HP15_2673 at 2823.482 kb on + strand, within HP15_2673 at 2823.497 kb on + strand, within HP15_2673 at 2823.509 kb on - strand, within HP15_2673 at 2823.554 kb on + strand, within HP15_2673 at 2823.679 kb on + strand, within HP15_2673 at 2823.679 kb on - strand, within HP15_2673 at 2823.771 kb on - strand at 2823.808 kb on + strand at 2823.808 kb on + strand at 2823.838 kb on - strand at 2823.873 kb on + strand, within HP15_2674 at 2823.873 kb on + strand, within HP15_2674 at 2823.881 kb on - strand, within HP15_2674 at 2823.979 kb on - strand, within HP15_2674 at 2824.310 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.434 kb on + strand, within HP15_2675 at 2824.473 kb on - strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.606 kb on - strand, within HP15_2675 at 2824.718 kb on - strand, within HP15_2675 at 2824.772 kb on - strand at 2824.806 kb on - strand at 2824.890 kb on - strand at 2824.977 kb on + strand at 2824.977 kb on + strand at 2824.985 kb on - strand at 2825.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 2,822,882 + +0.1 2,822,890 - +0.0 2,822,912 + -0.0 2,822,920 - -0.1 2,822,997 + -0.5 2,823,066 - -0.2 2,823,108 + HP15_2673 0.11 +1.8 2,823,156 + HP15_2673 0.18 +0.1 2,823,156 + HP15_2673 0.18 -0.4 2,823,156 + HP15_2673 0.18 +0.7 2,823,185 + HP15_2673 0.21 +0.3 2,823,193 - HP15_2673 0.23 -0.2 2,823,229 - HP15_2673 0.27 -0.2 2,823,482 + HP15_2673 0.62 -0.1 2,823,497 + HP15_2673 0.64 -1.6 2,823,509 - HP15_2673 0.66 +0.4 2,823,554 + HP15_2673 0.72 +0.4 2,823,679 + HP15_2673 0.89 +0.5 2,823,679 - HP15_2673 0.89 -0.5 2,823,771 - +0.4 2,823,808 + -0.4 2,823,808 + -0.5 2,823,838 - -0.3 2,823,873 + HP15_2674 0.22 +0.5 2,823,873 + HP15_2674 0.22 +0.7 2,823,881 - HP15_2674 0.25 +1.0 2,823,979 - HP15_2674 0.66 -0.0 2,824,310 + HP15_2675 0.28 -0.7 2,824,378 + HP15_2675 0.37 +0.7 2,824,378 + HP15_2675 0.37 +0.8 2,824,378 + HP15_2675 0.37 -0.6 2,824,386 - HP15_2675 0.39 +1.6 2,824,386 - HP15_2675 0.39 +0.0 2,824,434 + HP15_2675 0.45 +0.8 2,824,473 - HP15_2675 0.51 -0.0 2,824,514 + HP15_2675 0.57 -0.5 2,824,514 + HP15_2675 0.57 +0.7 2,824,606 - HP15_2675 0.70 -0.2 2,824,718 - HP15_2675 0.86 -1.6 2,824,772 - -0.4 2,824,806 - +0.8 2,824,890 - -0.8 2,824,977 + -0.4 2,824,977 + -0.2 2,824,985 - -1.0 2,825,026 + -0.8
Or see this region's nucleotide sequence