Strain Fitness in Marinobacter adhaerens HP15 around HP15_1908
Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment A, time point 3 |
---|---|---|---|---|---|
remove | |||||
2,018,191 | + | HP15_1907 | 0.29 | -3.7 | |
2,018,191 | + | HP15_1907 | 0.29 | -2.6 | |
2,018,191 | + | HP15_1907 | 0.29 | -3.5 | |
2,018,196 | + | HP15_1907 | 0.30 | -1.7 | |
2,018,196 | + | HP15_1907 | 0.30 | -2.0 | |
2,018,340 | + | HP15_1907 | 0.40 | -1.4 | |
2,018,835 | + | HP15_1907 | 0.77 | -2.4 | |
2,019,058 | + | -1.9 | |||
2,019,142 | + | -0.2 | |||
2,019,315 | + | HP15_1908 | 0.17 | +1.7 | |
2,019,364 | + | HP15_1908 | 0.22 | +1.2 | |
2,019,372 | - | HP15_1908 | 0.23 | -0.8 | |
2,019,489 | + | HP15_1908 | 0.35 | -0.7 | |
2,019,582 | + | HP15_1908 | 0.45 | -0.9 | |
2,019,582 | + | HP15_1908 | 0.45 | -1.1 | |
2,019,593 | + | HP15_1908 | 0.47 | +1.1 | |
2,019,685 | - | HP15_1908 | 0.56 | -1.7 | |
2,019,729 | - | HP15_1908 | 0.61 | +0.3 | |
2,019,827 | - | HP15_1908 | 0.72 | +0.4 | |
2,019,864 | + | HP15_1908 | 0.76 | +0.0 | |
2,019,907 | - | HP15_1908 | 0.80 | +0.6 | |
2,019,990 | - | HP15_1908 | 0.89 | +0.6 | |
2,020,117 | - | +1.3 | |||
2,020,828 | - | HP15_1909 | 0.62 | -1.0 | |
2,021,037 | + | HP15_1909 | 0.79 | -1.2 |
Or see this region's nucleotide sequence