Strain Fitness in Marinobacter adhaerens HP15 around HP15_1795

Experiment: monoculture; Experiment A, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1792 and HP15_1793 are separated by 33 nucleotidesHP15_1793 and HP15_1794 are separated by 1 nucleotidesHP15_1794 and HP15_1795 are separated by 284 nucleotidesHP15_1795 and HP15_1796 overlap by 8 nucleotidesHP15_1796 and HP15_1797 are separated by 74 nucleotides HP15_1792: HP15_1792 - B12-dependent methionine synthase, at 1,883,167 to 1,886,865 _1792 HP15_1793: HP15_1793 - conserved hypothetical protein, at 1,886,899 to 1,887,135 _1793 HP15_1794: HP15_1794 - secreted protein, at 1,887,137 to 1,887,241 _1794 HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148 _1795 HP15_1796: HP15_1796 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 1,889,141 to 1,889,647 _1796 HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723 _1797 Position (kb) 1887 1888 1889 1890Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1886.891 kb on - strandat 1887.072 kb on + strand, within HP15_1793at 1887.158 kb on - strand, within HP15_1794at 1887.244 kb on + strandat 1887.304 kb on + strandat 1887.353 kb on + strandat 1887.426 kb on + strandat 1887.649 kb on - strandat 1888.010 kb on + strand, within HP15_1795at 1888.018 kb on - strand, within HP15_1795at 1888.267 kb on + strand, within HP15_1795at 1889.200 kb on - strand, within HP15_1796at 1889.817 kb on - strandat 1889.931 kb on + strand, within HP15_1797at 1889.939 kb on - strand, within HP15_1797at 1889.958 kb on - strand, within HP15_1797at 1890.002 kb on + strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
remove
1,886,891 - -0.4
1,887,072 + HP15_1793 0.73 +0.4
1,887,158 - HP15_1794 0.20 +0.8
1,887,244 + -0.5
1,887,304 + -2.5
1,887,353 + -0.1
1,887,426 + -3.2
1,887,649 - -4.8
1,888,010 + HP15_1795 0.30 -3.0
1,888,018 - HP15_1795 0.30 -1.9
1,888,267 + HP15_1795 0.46 -3.0
1,889,200 - HP15_1796 0.12 -4.4
1,889,817 - -0.5
1,889,931 + HP15_1797 0.21 +1.0
1,889,939 - HP15_1797 0.22 -0.6
1,889,958 - HP15_1797 0.24 +0.8
1,890,002 + HP15_1797 0.28 +0.2
1,890,010 - HP15_1797 0.29 -1.7
1,890,010 - HP15_1797 0.29 +0.8

Or see this region's nucleotide sequence