Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_174 and HP15_175 are separated by 60 nucleotides HP15_175 and HP15_176 are separated by 175 nucleotides HP15_176 and HP15_178 are separated by 24 nucleotides
HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684
_174
HP15_175: HP15_175 - conserved hypothetical protein, at 166,745 to 167,203
_175
HP15_176: HP15_176 - uncharacterized conserved protein, at 167,379 to 167,765
_176
HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063
_178
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 166.535 kb on - strand, within HP15_174 at 166.597 kb on - strand at 166.624 kb on + strand at 166.671 kb on + strand at 166.671 kb on + strand at 166.671 kb on + strand at 166.679 kb on - strand at 166.679 kb on - strand at 166.722 kb on - strand at 166.722 kb on - strand at 166.881 kb on - strand, within HP15_175 at 166.911 kb on - strand, within HP15_175 at 166.943 kb on - strand, within HP15_175 at 166.945 kb on + strand, within HP15_175 at 166.988 kb on + strand, within HP15_175 at 166.996 kb on + strand, within HP15_175 at 166.996 kb on - strand, within HP15_175 at 167.004 kb on - strand, within HP15_175 at 167.008 kb on - strand, within HP15_175 at 167.011 kb on + strand, within HP15_175 at 167.149 kb on - strand, within HP15_175 at 167.189 kb on + strand at 167.190 kb on - strand at 167.301 kb on + strand at 167.315 kb on - strand at 167.320 kb on - strand at 167.404 kb on - strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.410 kb on + strand at 167.411 kb on - strand at 167.418 kb on - strand, within HP15_176 at 167.418 kb on - strand, within HP15_176 at 167.418 kb on - strand, within HP15_176 at 167.440 kb on - strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.489 kb on + strand, within HP15_176 at 167.497 kb on - strand, within HP15_176 at 167.497 kb on - strand, within HP15_176 at 167.500 kb on + strand, within HP15_176 at 167.582 kb on - strand, within HP15_176 at 167.614 kb on + strand, within HP15_176 at 167.615 kb on + strand, within HP15_176 at 167.679 kb on + strand, within HP15_176 at 167.694 kb on + strand, within HP15_176 at 167.694 kb on + strand, within HP15_176 at 167.707 kb on + strand, within HP15_176 at 167.707 kb on + strand, within HP15_176 at 167.763 kb on - strand at 167.795 kb on + strand at 167.858 kb on + strand at 168.024 kb on + strand, within HP15_178 at 168.037 kb on + strand, within HP15_178 at 168.074 kb on + strand, within HP15_178 at 168.185 kb on + strand, within HP15_178 at 168.371 kb on + strand, within HP15_178 at 168.434 kb on - strand, within HP15_178 at 168.531 kb on + strand, within HP15_178 at 168.586 kb on + strand, within HP15_178 at 168.592 kb on + strand, within HP15_178 at 168.601 kb on + strand, within HP15_178 at 168.741 kb on - strand, within HP15_178
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 166,535 - HP15_174 0.88 +0.5 166,597 - -0.0 166,624 + +0.9 166,671 + -0.0 166,671 + -0.3 166,671 + +0.3 166,679 - +0.9 166,679 - +0.4 166,722 - -0.2 166,722 - -0.1 166,881 - HP15_175 0.30 +0.8 166,911 - HP15_175 0.36 -0.8 166,943 - HP15_175 0.43 +0.1 166,945 + HP15_175 0.44 +1.2 166,988 + HP15_175 0.53 +0.1 166,996 + HP15_175 0.55 +0.1 166,996 - HP15_175 0.55 +0.5 167,004 - HP15_175 0.56 +0.9 167,008 - HP15_175 0.57 -0.0 167,011 + HP15_175 0.58 +0.0 167,149 - HP15_175 0.88 -0.4 167,189 + +1.5 167,190 - -0.0 167,301 + -0.0 167,315 - +1.2 167,320 - -0.3 167,404 - -1.5 167,410 + +0.6 167,410 + +0.0 167,410 + +0.1 167,410 + +0.7 167,411 - +0.1 167,418 - HP15_176 0.10 +0.6 167,418 - HP15_176 0.10 -0.1 167,418 - HP15_176 0.10 -0.4 167,440 - HP15_176 0.16 -0.1 167,489 + HP15_176 0.28 -0.0 167,489 + HP15_176 0.28 -0.3 167,489 + HP15_176 0.28 -3.5 167,489 + HP15_176 0.28 -1.0 167,489 + HP15_176 0.28 -0.6 167,489 + HP15_176 0.28 -1.7 167,497 - HP15_176 0.30 -0.8 167,497 - HP15_176 0.30 -0.3 167,500 + HP15_176 0.31 +0.4 167,582 - HP15_176 0.52 +0.3 167,614 + HP15_176 0.61 -0.0 167,615 + HP15_176 0.61 -0.9 167,679 + HP15_176 0.78 -1.2 167,694 + HP15_176 0.81 -0.5 167,694 + HP15_176 0.81 -0.1 167,707 + HP15_176 0.85 -0.6 167,707 + HP15_176 0.85 +0.9 167,763 - +0.5 167,795 + +0.8 167,858 + -0.1 168,024 + HP15_178 0.10 +0.2 168,037 + HP15_178 0.11 -0.3 168,074 + HP15_178 0.12 -0.8 168,185 + HP15_178 0.17 +0.4 168,371 + HP15_178 0.26 -1.5 168,434 - HP15_178 0.28 -0.7 168,531 + HP15_178 0.33 +0.7 168,586 + HP15_178 0.35 +0.0 168,592 + HP15_178 0.35 +0.6 168,601 + HP15_178 0.36 +0.5 168,741 - HP15_178 0.42 -0.4
Or see this region's nucleotide sequence