Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1600 and HP15_1601 are separated by 8 nucleotides HP15_1601 and HP15_1602 are separated by 166 nucleotides HP15_1602 and HP15_1603 are separated by 3 nucleotides
HP15_1600: HP15_1600 - transglutaminase-like cysteine peptidase-like protein, at 1,697,388 to 1,698,050
_1600
HP15_1601: HP15_1601 - general secretion pathway protein C-like protein, at 1,698,059 to 1,698,709
_1601
HP15_1602: HP15_1602 - type II secretion system protein E, at 1,698,876 to 1,700,384
_1602
HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599
_1603
Position (kb)
1698
1699
1700
1701 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1698.081 kb on + strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.091 kb on + strand at 1698.099 kb on - strand at 1698.122 kb on - strand at 1698.182 kb on - strand, within HP15_1601 at 1698.195 kb on + strand, within HP15_1601 at 1698.260 kb on - strand, within HP15_1601 at 1698.304 kb on - strand, within HP15_1601 at 1698.519 kb on - strand, within HP15_1601 at 1698.582 kb on + strand, within HP15_1601 at 1698.584 kb on + strand, within HP15_1601 at 1698.670 kb on - strand at 1698.783 kb on + strand at 1698.789 kb on + strand at 1698.803 kb on - strand at 1699.018 kb on - strand at 1699.084 kb on + strand, within HP15_1602 at 1699.092 kb on - strand, within HP15_1602 at 1699.255 kb on - strand, within HP15_1602 at 1699.403 kb on + strand, within HP15_1602 at 1699.467 kb on - strand, within HP15_1602 at 1699.544 kb on - strand, within HP15_1602 at 1699.748 kb on - strand, within HP15_1602 at 1699.803 kb on + strand, within HP15_1602 at 1699.803 kb on + strand, within HP15_1602 at 1700.011 kb on + strand, within HP15_1602 at 1700.057 kb on + strand, within HP15_1602 at 1700.219 kb on - strand, within HP15_1602 at 1700.291 kb on - strand at 1700.534 kb on + strand, within HP15_1603 at 1700.732 kb on - strand, within HP15_1603 at 1700.732 kb on - strand, within HP15_1603 at 1700.751 kb on - strand, within HP15_1603 at 1700.950 kb on + strand, within HP15_1603 at 1701.129 kb on - strand, within HP15_1603 at 1701.193 kb on - strand, within HP15_1603
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 1,698,081 + -1.9 1,698,089 - +0.2 1,698,089 - -0.6 1,698,091 + +0.1 1,698,099 - +0.4 1,698,122 - -0.4 1,698,182 - HP15_1601 0.19 +0.1 1,698,195 + HP15_1601 0.21 -0.1 1,698,260 - HP15_1601 0.31 +0.2 1,698,304 - HP15_1601 0.38 -0.7 1,698,519 - HP15_1601 0.71 +0.4 1,698,582 + HP15_1601 0.80 -0.2 1,698,584 + HP15_1601 0.81 -0.6 1,698,670 - -0.8 1,698,783 + +0.1 1,698,789 + -0.3 1,698,803 - -0.5 1,699,018 - -1.3 1,699,084 + HP15_1602 0.14 -0.5 1,699,092 - HP15_1602 0.14 +0.6 1,699,255 - HP15_1602 0.25 -1.0 1,699,403 + HP15_1602 0.35 -0.2 1,699,467 - HP15_1602 0.39 -1.7 1,699,544 - HP15_1602 0.44 -0.0 1,699,748 - HP15_1602 0.58 -2.8 1,699,803 + HP15_1602 0.61 -1.0 1,699,803 + HP15_1602 0.61 -1.0 1,700,011 + HP15_1602 0.75 -0.5 1,700,057 + HP15_1602 0.78 -0.7 1,700,219 - HP15_1602 0.89 +0.9 1,700,291 - -0.5 1,700,534 + HP15_1603 0.12 -0.7 1,700,732 - HP15_1603 0.28 -0.6 1,700,732 - HP15_1603 0.28 -1.4 1,700,751 - HP15_1603 0.30 +2.5 1,700,950 + HP15_1603 0.46 -0.3 1,701,129 - HP15_1603 0.61 -1.0 1,701,193 - HP15_1603 0.66 -0.1
Or see this region's nucleotide sequence