Strain Fitness in Marinobacter adhaerens HP15 around HP15_54

Experiment: monoculture; Experiment A, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_53 and HP15_54 overlap by 1 nucleotidesHP15_54 and HP15_55 are separated by 10 nucleotidesHP15_55 and HP15_56 are separated by 24 nucleotides HP15_53: HP15_53 - acyl-CoA dehydrogenase domain protein, at 58,292 to 59,443 _53 HP15_54: HP15_54 - acyl-CoA dehydrogenase domain protein, at 59,443 to 60,501 _54 HP15_55: HP15_55 - enoyl-CoA hydratase/isomerase, at 60,512 to 61,312 _55 HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461 _56 Position (kb) 59 60 61Strain fitness (log2 ratio) -1 0 1 2at 58.468 kb on + strand, within HP15_53at 58.474 kb on + strand, within HP15_53at 58.497 kb on - strand, within HP15_53at 58.548 kb on - strand, within HP15_53at 58.576 kb on - strand, within HP15_53at 58.685 kb on - strand, within HP15_53at 58.717 kb on - strand, within HP15_53at 58.745 kb on + strand, within HP15_53at 58.793 kb on + strand, within HP15_53at 58.804 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 59.001 kb on + strand, within HP15_53at 59.022 kb on - strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.088 kb on - strand, within HP15_53at 59.158 kb on + strand, within HP15_53at 59.166 kb on - strand, within HP15_53at 59.241 kb on + strand, within HP15_53at 59.259 kb on - strand, within HP15_53at 59.322 kb on - strand, within HP15_53at 59.322 kb on - strand, within HP15_53at 59.324 kb on + strand, within HP15_53at 59.326 kb on - strand, within HP15_53at 59.334 kb on + strandat 59.334 kb on + strandat 59.342 kb on - strandat 59.342 kb on - strandat 59.379 kb on - strandat 59.495 kb on - strandat 59.498 kb on - strandat 59.513 kb on + strandat 59.513 kb on - strandat 59.521 kb on - strandat 59.521 kb on - strandat 59.570 kb on - strand, within HP15_54at 59.580 kb on - strand, within HP15_54at 59.622 kb on - strand, within HP15_54at 59.732 kb on - strand, within HP15_54at 59.794 kb on + strand, within HP15_54at 59.851 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.894 kb on + strand, within HP15_54at 59.902 kb on - strand, within HP15_54at 60.035 kb on + strand, within HP15_54at 60.068 kb on - strand, within HP15_54at 60.137 kb on - strand, within HP15_54at 60.147 kb on - strand, within HP15_54at 60.174 kb on - strand, within HP15_54at 60.183 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.270 kb on - strand, within HP15_54at 60.328 kb on - strand, within HP15_54at 60.330 kb on + strand, within HP15_54at 60.332 kb on + strand, within HP15_54at 60.337 kb on + strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.369 kb on + strand, within HP15_54at 60.397 kb on - strandat 60.439 kb on - strandat 60.570 kb on + strandat 60.577 kb on + strandat 60.578 kb on - strandat 60.578 kb on - strandat 60.635 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.643 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.701 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.741 kb on - strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.110 kb on + strand, within HP15_55at 61.111 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.128 kb on - strand, within HP15_55at 61.168 kb on + strand, within HP15_55at 61.186 kb on - strand, within HP15_55at 61.191 kb on - strand, within HP15_55at 61.212 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.489 kb on + strand, within HP15_56at 61.499 kb on - strand, within HP15_56

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
remove
58,468 + HP15_53 0.15 +0.5
58,474 + HP15_53 0.16 +1.1
58,497 - HP15_53 0.18 +0.4
58,548 - HP15_53 0.22 -0.4
58,576 - HP15_53 0.25 +0.8
58,685 - HP15_53 0.34 +0.6
58,717 - HP15_53 0.37 +1.3
58,745 + HP15_53 0.39 +0.1
58,793 + HP15_53 0.43 -1.5
58,804 + HP15_53 0.44 +1.5
58,819 + HP15_53 0.46 +0.5
58,819 + HP15_53 0.46 +0.7
58,819 + HP15_53 0.46 +1.3
58,932 - HP15_53 0.56 -0.3
58,932 - HP15_53 0.56 -0.1
58,932 - HP15_53 0.56 +0.5
59,001 + HP15_53 0.62 +1.0
59,022 - HP15_53 0.63 -0.8
59,080 + HP15_53 0.68 +0.6
59,080 + HP15_53 0.68 +1.5
59,080 + HP15_53 0.68 +0.0
59,080 + HP15_53 0.68 -0.0
59,080 + HP15_53 0.68 +1.0
59,088 - HP15_53 0.69 +0.1
59,158 + HP15_53 0.75 +0.9
59,166 - HP15_53 0.76 -0.1
59,241 + HP15_53 0.82 -0.2
59,259 - HP15_53 0.84 -1.0
59,322 - HP15_53 0.89 +0.8
59,322 - HP15_53 0.89 -0.5
59,324 + HP15_53 0.90 +1.5
59,326 - HP15_53 0.90 -0.4
59,334 + +1.6
59,334 + +0.8
59,342 - +0.1
59,342 - -0.0
59,379 - +0.6
59,495 - -0.8
59,498 - +0.2
59,513 + +0.7
59,513 - +0.3
59,521 - -0.8
59,521 - +0.1
59,570 - HP15_54 0.12 -1.4
59,580 - HP15_54 0.13 +0.4
59,622 - HP15_54 0.17 -0.2
59,732 - HP15_54 0.27 -0.1
59,794 + HP15_54 0.33 +1.3
59,851 - HP15_54 0.39 -0.8
59,880 - HP15_54 0.41 -0.1
59,880 - HP15_54 0.41 +0.2
59,885 + HP15_54 0.42 +0.2
59,885 + HP15_54 0.42 +0.3
59,894 + HP15_54 0.43 -0.2
59,902 - HP15_54 0.43 +0.5
60,035 + HP15_54 0.56 +0.9
60,068 - HP15_54 0.59 -0.4
60,137 - HP15_54 0.66 +0.8
60,147 - HP15_54 0.66 +1.9
60,174 - HP15_54 0.69 -0.2
60,183 - HP15_54 0.70 +0.5
60,228 - HP15_54 0.74 -1.7
60,228 - HP15_54 0.74 -0.0
60,270 - HP15_54 0.78 +0.1
60,328 - HP15_54 0.84 +0.5
60,330 + HP15_54 0.84 -0.3
60,332 + HP15_54 0.84 +1.5
60,337 + HP15_54 0.84 +0.9
60,338 - HP15_54 0.85 -1.6
60,338 - HP15_54 0.85 +0.6
60,369 + HP15_54 0.87 +1.0
60,397 - -0.1
60,439 - +0.7
60,570 + +0.2
60,577 + -0.6
60,578 - -0.5
60,578 - -0.7
60,635 + HP15_55 0.15 +0.4
60,637 + HP15_55 0.16 +0.6
60,637 + HP15_55 0.16 +0.6
60,637 + HP15_55 0.16 +0.4
60,643 - HP15_55 0.16 +0.0
60,645 - HP15_55 0.17 -0.2
60,645 - HP15_55 0.17 +1.7
60,701 + HP15_55 0.24 +1.1
60,709 + HP15_55 0.25 -0.3
60,709 + HP15_55 0.25 -1.7
60,741 - HP15_55 0.29 -0.1
61,046 + HP15_55 0.67 +0.4
61,046 + HP15_55 0.67 +0.0
61,103 + HP15_55 0.74 +0.9
61,103 + HP15_55 0.74 +0.9
61,103 + HP15_55 0.74 -1.0
61,110 + HP15_55 0.75 -0.1
61,111 - HP15_55 0.75 -0.0
61,118 - HP15_55 0.76 +1.2
61,118 - HP15_55 0.76 +1.5
61,128 - HP15_55 0.77 +0.9
61,168 + HP15_55 0.82 +0.5
61,186 - HP15_55 0.84 +0.2
61,191 - HP15_55 0.85 +0.8
61,212 - HP15_55 0.87 +1.5
61,221 - HP15_55 0.89 +0.4
61,221 - HP15_55 0.89 +0.7
61,489 + HP15_56 0.14 -0.3
61,499 - HP15_56 0.14 -0.1

Or see this region's nucleotide sequence