Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4176 and HP15_4177 are separated by 80 nucleotides HP15_4177 and HP15_4178 are separated by 16 nucleotides HP15_4178 and HP15_4179 overlap by 1 nucleotides
HP15_4176: HP15_4176 - electron-transferring-flavoprotein dehydrogenase, at 4,414,535 to 4,416,187
_4176
HP15_4177: HP15_4177 - acetyl-CoA synthetase, at 4,416,268 to 4,418,256
_4177
HP15_4178: HP15_4178 - pyruvate carboxyltransferase, at 4,418,273 to 4,419,184
_4178
HP15_4179: HP15_4179 - methylcrotonyl-CoA carboxylase, alpha subunit, at 4,419,184 to 4,421,178
_4179
Position (kb)
4416
4417
4418
4419 Strain fitness (log2 ratio)
-2
-1
0
1 at 4415.667 kb on - strand, within HP15_4176 at 4416.320 kb on + strand at 4416.325 kb on + strand at 4416.333 kb on - strand at 4416.333 kb on - strand at 4416.391 kb on - strand at 4416.414 kb on + strand at 4416.450 kb on + strand at 4416.597 kb on + strand, within HP15_4177 at 4416.613 kb on - strand, within HP15_4177 at 4416.654 kb on + strand, within HP15_4177 at 4416.711 kb on + strand, within HP15_4177 at 4416.735 kb on + strand, within HP15_4177 at 4416.737 kb on + strand, within HP15_4177 at 4416.754 kb on - strand, within HP15_4177 at 4416.769 kb on - strand, within HP15_4177 at 4416.832 kb on - strand, within HP15_4177 at 4416.838 kb on + strand, within HP15_4177 at 4416.846 kb on - strand, within HP15_4177 at 4416.872 kb on + strand, within HP15_4177 at 4417.486 kb on + strand, within HP15_4177 at 4417.586 kb on + strand, within HP15_4177 at 4417.593 kb on + strand, within HP15_4177 at 4417.773 kb on - strand, within HP15_4177 at 4417.773 kb on - strand, within HP15_4177 at 4417.893 kb on - strand, within HP15_4177 at 4417.893 kb on - strand, within HP15_4177 at 4417.912 kb on + strand, within HP15_4177 at 4417.975 kb on + strand, within HP15_4177 at 4417.975 kb on + strand, within HP15_4177 at 4418.021 kb on - strand, within HP15_4177 at 4418.069 kb on + strand at 4418.098 kb on - strand at 4418.121 kb on - strand at 4418.157 kb on + strand at 4418.157 kb on + strand at 4418.165 kb on - strand at 4418.176 kb on - strand at 4418.450 kb on - strand, within HP15_4178 at 4418.461 kb on - strand, within HP15_4178 at 4418.595 kb on - strand, within HP15_4178 at 4418.710 kb on + strand, within HP15_4178 at 4418.813 kb on + strand, within HP15_4178 at 4418.952 kb on - strand, within HP15_4178 at 4419.061 kb on - strand, within HP15_4178
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 4,415,667 - HP15_4176 0.68 +0.1 4,416,320 + +0.4 4,416,325 + +0.4 4,416,333 - -0.0 4,416,333 - -0.0 4,416,391 - -0.4 4,416,414 + -1.0 4,416,450 + +0.4 4,416,597 + HP15_4177 0.17 +0.4 4,416,613 - HP15_4177 0.17 -1.9 4,416,654 + HP15_4177 0.19 -0.8 4,416,711 + HP15_4177 0.22 -1.3 4,416,735 + HP15_4177 0.23 +0.8 4,416,737 + HP15_4177 0.24 -0.4 4,416,754 - HP15_4177 0.24 +0.3 4,416,769 - HP15_4177 0.25 +1.0 4,416,832 - HP15_4177 0.28 -0.4 4,416,838 + HP15_4177 0.29 +1.1 4,416,846 - HP15_4177 0.29 -1.7 4,416,872 + HP15_4177 0.30 -0.3 4,417,486 + HP15_4177 0.61 +1.1 4,417,586 + HP15_4177 0.66 +0.1 4,417,593 + HP15_4177 0.67 -0.3 4,417,773 - HP15_4177 0.76 +0.3 4,417,773 - HP15_4177 0.76 -0.4 4,417,893 - HP15_4177 0.82 -1.1 4,417,893 - HP15_4177 0.82 +0.6 4,417,912 + HP15_4177 0.83 -0.1 4,417,975 + HP15_4177 0.86 +0.3 4,417,975 + HP15_4177 0.86 -0.7 4,418,021 - HP15_4177 0.88 +0.6 4,418,069 + -0.8 4,418,098 - +0.2 4,418,121 - -0.1 4,418,157 + -0.6 4,418,157 + -0.7 4,418,165 - +0.3 4,418,176 - -0.5 4,418,450 - HP15_4178 0.19 +0.2 4,418,461 - HP15_4178 0.21 +0.7 4,418,595 - HP15_4178 0.35 +0.9 4,418,710 + HP15_4178 0.48 +0.4 4,418,813 + HP15_4178 0.59 -0.2 4,418,952 - HP15_4178 0.74 +1.1 4,419,061 - HP15_4178 0.86 -0.0
Or see this region's nucleotide sequence