Strain Fitness in Marinobacter adhaerens HP15 around HP15_4058

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4056 and HP15_4057 are separated by 7 nucleotidesHP15_4057 and HP15_4058 are separated by 84 nucleotidesHP15_4058 and HP15_4059 overlap by 17 nucleotides HP15_4056: HP15_4056 - SEC-C motif domain protein, at 4,290,926 to 4,291,273 _4056 HP15_4057: HP15_4057 - protein containing rhodanese-like domains, at 4,291,281 to 4,291,661 _4057 HP15_4058: HP15_4058 - putative thiol-disulfide oxidoreductase DCC, at 4,291,746 to 4,292,120 _4058 HP15_4059: HP15_4059 - protein containing CHAD domain, at 4,292,104 to 4,293,456 _4059 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1at 4290.895 kb on + strandat 4291.014 kb on + strand, within HP15_4056at 4291.093 kb on - strand, within HP15_4056at 4291.111 kb on + strand, within HP15_4056at 4291.111 kb on + strand, within HP15_4056at 4291.170 kb on + strand, within HP15_4056at 4291.170 kb on + strand, within HP15_4056at 4291.204 kb on + strand, within HP15_4056at 4291.258 kb on + strandat 4291.346 kb on - strand, within HP15_4057at 4291.368 kb on + strand, within HP15_4057at 4291.641 kb on - strandat 4291.679 kb on - strandat 4291.690 kb on + strandat 4291.692 kb on - strandat 4291.709 kb on + strandat 4291.709 kb on + strandat 4291.851 kb on + strand, within HP15_4058at 4291.858 kb on + strand, within HP15_4058at 4291.922 kb on + strand, within HP15_4058at 4291.922 kb on + strand, within HP15_4058at 4291.954 kb on + strand, within HP15_4058at 4291.962 kb on - strand, within HP15_4058at 4291.966 kb on + strand, within HP15_4058at 4292.003 kb on + strand, within HP15_4058at 4292.003 kb on + strand, within HP15_4058at 4292.003 kb on + strand, within HP15_4058at 4292.003 kb on + strand, within HP15_4058at 4292.003 kb on + strand, within HP15_4058at 4292.005 kb on + strand, within HP15_4058at 4292.011 kb on - strand, within HP15_4058at 4292.030 kb on - strand, within HP15_4058at 4292.159 kb on + strandat 4292.303 kb on - strand, within HP15_4059at 4292.402 kb on + strand, within HP15_4059at 4292.402 kb on + strand, within HP15_4059at 4292.410 kb on - strand, within HP15_4059at 4292.532 kb on + strand, within HP15_4059at 4292.540 kb on - strand, within HP15_4059at 4292.609 kb on + strand, within HP15_4059at 4292.686 kb on + strand, within HP15_4059at 4292.724 kb on - strand, within HP15_4059at 4292.726 kb on + strand, within HP15_4059at 4292.734 kb on - strand, within HP15_4059at 4292.764 kb on + strand, within HP15_4059at 4292.838 kb on + strand, within HP15_4059at 4292.838 kb on + strand, within HP15_4059at 4292.846 kb on - strand, within HP15_4059at 4292.846 kb on - strand, within HP15_4059at 4292.886 kb on + strand, within HP15_4059at 4292.894 kb on - strand, within HP15_4059at 4292.980 kb on - strand, within HP15_4059at 4293.044 kb on - strand, within HP15_4059at 4293.055 kb on - strand, within HP15_4059at 4293.081 kb on + strand, within HP15_4059at 4293.104 kb on + strand, within HP15_4059

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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4,290,895 + -0.1
4,291,014 + HP15_4056 0.25 -0.2
4,291,093 - HP15_4056 0.48 -0.2
4,291,111 + HP15_4056 0.53 +0.1
4,291,111 + HP15_4056 0.53 +0.4
4,291,170 + HP15_4056 0.70 +0.6
4,291,170 + HP15_4056 0.70 -0.6
4,291,204 + HP15_4056 0.80 +0.7
4,291,258 + +0.3
4,291,346 - HP15_4057 0.17 +0.1
4,291,368 + HP15_4057 0.23 +0.5
4,291,641 - +0.2
4,291,679 - -0.4
4,291,690 + +0.0
4,291,692 - +0.9
4,291,709 + +0.3
4,291,709 + -0.3
4,291,851 + HP15_4058 0.28 -0.8
4,291,858 + HP15_4058 0.30 -2.0
4,291,922 + HP15_4058 0.47 +0.5
4,291,922 + HP15_4058 0.47 -1.2
4,291,954 + HP15_4058 0.55 -0.4
4,291,962 - HP15_4058 0.58 -0.2
4,291,966 + HP15_4058 0.59 +0.7
4,292,003 + HP15_4058 0.69 -0.1
4,292,003 + HP15_4058 0.69 +0.1
4,292,003 + HP15_4058 0.69 +0.1
4,292,003 + HP15_4058 0.69 +0.0
4,292,003 + HP15_4058 0.69 -1.6
4,292,005 + HP15_4058 0.69 -1.7
4,292,011 - HP15_4058 0.71 -0.2
4,292,030 - HP15_4058 0.76 -0.8
4,292,159 + +0.7
4,292,303 - HP15_4059 0.15 -0.1
4,292,402 + HP15_4059 0.22 +0.1
4,292,402 + HP15_4059 0.22 +0.8
4,292,410 - HP15_4059 0.23 -0.9
4,292,532 + HP15_4059 0.32 -0.9
4,292,540 - HP15_4059 0.32 -0.2
4,292,609 + HP15_4059 0.37 -0.5
4,292,686 + HP15_4059 0.43 -0.2
4,292,724 - HP15_4059 0.46 +0.3
4,292,726 + HP15_4059 0.46 +0.1
4,292,734 - HP15_4059 0.47 -0.3
4,292,764 + HP15_4059 0.49 -0.7
4,292,838 + HP15_4059 0.54 -0.5
4,292,838 + HP15_4059 0.54 -0.5
4,292,846 - HP15_4059 0.55 -0.4
4,292,846 - HP15_4059 0.55 -0.1
4,292,886 + HP15_4059 0.58 +0.6
4,292,894 - HP15_4059 0.58 +0.5
4,292,980 - HP15_4059 0.65 -0.5
4,293,044 - HP15_4059 0.69 +0.6
4,293,055 - HP15_4059 0.70 -0.4
4,293,081 + HP15_4059 0.72 -0.8
4,293,104 + HP15_4059 0.74 -0.1

Or see this region's nucleotide sequence