Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_959 and HP15_960 are separated by 459 nucleotides HP15_960 and HP15_961 are separated by 130 nucleotides
HP15_959: HP15_959 - conserved hypothetical protein, at 974,488 to 975,513
_959
HP15_960: HP15_960 - conserved hypothetical protein, at 975,973 to 976,455
_960
HP15_961: HP15_961 - hypothetical protein, at 976,586 to 976,732
_961
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 975.006 kb on + strand, within HP15_959 at 975.012 kb on + strand, within HP15_959 at 975.016 kb on + strand, within HP15_959 at 975.140 kb on - strand, within HP15_959 at 975.301 kb on + strand, within HP15_959 at 975.310 kb on - strand, within HP15_959 at 975.588 kb on - strand at 975.607 kb on - strand at 975.622 kb on + strand at 975.622 kb on + strand at 975.655 kb on + strand at 975.769 kb on + strand at 975.795 kb on - strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.798 kb on + strand at 975.806 kb on - strand at 975.822 kb on + strand at 975.979 kb on + strand at 975.980 kb on + strand at 975.980 kb on + strand at 975.988 kb on - strand at 976.014 kb on + strand at 976.017 kb on - strand at 976.070 kb on + strand, within HP15_960 at 976.124 kb on + strand, within HP15_960 at 976.130 kb on - strand, within HP15_960 at 976.207 kb on + strand, within HP15_960 at 976.233 kb on + strand, within HP15_960 at 976.328 kb on - strand, within HP15_960 at 976.450 kb on + strand at 976.505 kb on + strand at 976.596 kb on + strand at 976.641 kb on + strand, within HP15_961 at 976.689 kb on + strand, within HP15_961 at 976.797 kb on + strand at 976.798 kb on + strand at 976.832 kb on - strand at 976.856 kb on + strand at 976.864 kb on - strand at 976.871 kb on - strand at 976.876 kb on - strand at 976.896 kb on - strand at 976.925 kb on + strand at 976.925 kb on + strand at 977.011 kb on - strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.041 kb on - strand at 977.041 kb on - strand at 977.041 kb on - strand at 977.048 kb on + strand at 977.084 kb on + strand at 977.092 kb on - strand at 977.106 kb on + strand at 977.198 kb on - strand at 977.224 kb on + strand at 977.296 kb on + strand at 977.332 kb on + strand at 977.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 975,006 + HP15_959 0.50 -0.5 975,012 + HP15_959 0.51 +0.0 975,016 + HP15_959 0.51 +1.7 975,140 - HP15_959 0.64 -0.7 975,301 + HP15_959 0.79 +0.5 975,310 - HP15_959 0.80 +0.5 975,588 - +0.3 975,607 - +0.4 975,622 + +0.3 975,622 + -0.1 975,655 + +0.8 975,769 + -0.2 975,795 - +0.4 975,798 + +0.2 975,798 + -0.2 975,798 + -0.1 975,798 + -0.4 975,806 - -0.1 975,822 + +0.4 975,979 + +0.1 975,980 + -0.1 975,980 + -1.1 975,988 - +0.3 976,014 + -1.4 976,017 - -1.9 976,070 + HP15_960 0.20 +0.5 976,124 + HP15_960 0.31 -0.8 976,130 - HP15_960 0.33 -0.3 976,207 + HP15_960 0.48 -0.3 976,233 + HP15_960 0.54 -1.3 976,328 - HP15_960 0.73 -0.1 976,450 + +1.2 976,505 + +0.6 976,596 + +0.2 976,641 + HP15_961 0.37 -0.2 976,689 + HP15_961 0.70 -0.1 976,797 + -0.5 976,798 + +1.2 976,832 - +0.8 976,856 + -3.3 976,864 - -1.3 976,871 - -0.3 976,876 - +1.2 976,896 - -1.1 976,925 + +0.6 976,925 + -1.2 977,011 - +2.5 977,033 + -0.1 977,033 + +1.2 977,033 + +0.7 977,033 + -2.2 977,033 + +0.0 977,033 + -0.2 977,033 + +0.4 977,033 + -0.7 977,041 - +0.5 977,041 - -0.4 977,041 - +0.0 977,048 + +1.6 977,084 + +1.6 977,092 - +0.7 977,106 + +0.6 977,198 - -0.2 977,224 + +1.7 977,296 + -0.2 977,332 + +1.0 977,377 + -1.0
Or see this region's nucleotide sequence