Strain Fitness in Marinobacter adhaerens HP15 around HP15_458

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_457 and HP15_458 are separated by 119 nucleotidesHP15_458 and HP15_459 are separated by 46 nucleotidesHP15_459 and HP15_460 are separated by 184 nucleotides HP15_457: HP15_457 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 461,617 to 463,896 _457 HP15_458: HP15_458 - transcriptional regulator, LysR family protein, at 464,016 to 464,906 _458 HP15_459: HP15_459 - glycine cleavage H-protein, subgroup, at 464,953 to 465,345 _459 HP15_460: HP15_460 - SAM-dependent methyltransferase, at 465,530 to 466,735 _460 Position (kb) 464 465Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 463.202 kb on + strand, within HP15_457at 463.202 kb on + strand, within HP15_457at 463.210 kb on - strand, within HP15_457at 463.210 kb on - strand, within HP15_457at 463.232 kb on - strand, within HP15_457at 463.258 kb on + strand, within HP15_457at 463.331 kb on - strand, within HP15_457at 463.341 kb on + strand, within HP15_457at 463.439 kb on - strand, within HP15_457at 463.603 kb on + strand, within HP15_457at 463.611 kb on - strand, within HP15_457at 464.109 kb on + strand, within HP15_458at 464.109 kb on + strand, within HP15_458at 464.117 kb on - strand, within HP15_458at 464.117 kb on - strand, within HP15_458at 464.172 kb on + strand, within HP15_458at 464.312 kb on + strand, within HP15_458at 464.363 kb on + strand, within HP15_458at 464.426 kb on + strand, within HP15_458at 464.521 kb on - strand, within HP15_458at 464.541 kb on - strand, within HP15_458at 464.552 kb on + strand, within HP15_458at 464.552 kb on + strand, within HP15_458at 464.552 kb on + strand, within HP15_458at 464.662 kb on - strand, within HP15_458at 464.677 kb on - strand, within HP15_458at 464.677 kb on - strand, within HP15_458at 464.758 kb on - strand, within HP15_458at 464.764 kb on - strand, within HP15_458at 464.800 kb on - strand, within HP15_458at 464.845 kb on + strandat 464.900 kb on + strandat 464.921 kb on - strandat 465.233 kb on - strand, within HP15_459at 465.233 kb on - strand, within HP15_459at 465.436 kb on - strandat 465.612 kb on + strandat 465.703 kb on - strand, within HP15_460at 465.703 kb on - strand, within HP15_460at 465.715 kb on - strand, within HP15_460at 465.743 kb on - strand, within HP15_460at 465.758 kb on - strand, within HP15_460at 465.758 kb on - strand, within HP15_460

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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463,202 + HP15_457 0.70 -4.0
463,202 + HP15_457 0.70 -2.7
463,210 - HP15_457 0.70 -4.0
463,210 - HP15_457 0.70 -4.1
463,232 - HP15_457 0.71 -4.3
463,258 + HP15_457 0.72 -2.2
463,331 - HP15_457 0.75 -1.4
463,341 + HP15_457 0.76 -3.2
463,439 - HP15_457 0.80 -6.3
463,603 + HP15_457 0.87 -4.8
463,611 - HP15_457 0.87 -3.6
464,109 + HP15_458 0.10 -3.7
464,109 + HP15_458 0.10 -2.7
464,117 - HP15_458 0.11 -6.5
464,117 - HP15_458 0.11 -7.9
464,172 + HP15_458 0.18 -4.6
464,312 + HP15_458 0.33 -6.7
464,363 + HP15_458 0.39 -6.4
464,426 + HP15_458 0.46 -6.3
464,521 - HP15_458 0.57 -2.8
464,541 - HP15_458 0.59 -2.3
464,552 + HP15_458 0.60 -3.2
464,552 + HP15_458 0.60 -6.1
464,552 + HP15_458 0.60 -4.0
464,662 - HP15_458 0.73 -4.1
464,677 - HP15_458 0.74 -3.4
464,677 - HP15_458 0.74 -4.7
464,758 - HP15_458 0.83 -2.7
464,764 - HP15_458 0.84 -2.7
464,800 - HP15_458 0.88 -4.1
464,845 + -5.0
464,900 + -0.2
464,921 - +1.2
465,233 - HP15_459 0.71 -0.7
465,233 - HP15_459 0.71 +0.0
465,436 - -2.6
465,612 + +0.7
465,703 - HP15_460 0.14 -0.7
465,703 - HP15_460 0.14 +0.3
465,715 - HP15_460 0.15 +0.1
465,743 - HP15_460 0.18 -0.1
465,758 - HP15_460 0.19 -2.0
465,758 - HP15_460 0.19 +1.1

Or see this region's nucleotide sequence