Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_982 and HP15_983 are separated by 191 nucleotides HP15_983 and HP15_984 are separated by 94 nucleotides HP15_984 and HP15_985 are separated by 113 nucleotides HP15_985 and HP15_986 overlap by 4 nucleotides
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
HP15_983: HP15_983 - glyoxalase family protein, at 993,471 to 993,974
_983
HP15_984: HP15_984 - transcriptional regulator, LysR family protein, at 994,069 to 994,938
_984
HP15_985: HP15_985 - glutathione-dependent formaldehyde-activating, GFA, at 995,052 to 995,402
_985
HP15_986: HP15_986 - beta-lactamase, at 995,399 to 996,613
_986
Position (kb) 994
995 Strain fitness (log2 ratio) -1
0
1
2 at 993.092 kb on - strand at 993.128 kb on - strand at 993.177 kb on + strand at 993.177 kb on + strand at 993.220 kb on - strand at 993.242 kb on + strand at 993.250 kb on - strand at 993.254 kb on + strand at 993.490 kb on + strand at 993.540 kb on + strand, within HP15_983 at 993.766 kb on + strand, within HP15_983 at 993.792 kb on + strand, within HP15_983 at 993.792 kb on + strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.807 kb on + strand, within HP15_983 at 993.815 kb on - strand, within HP15_983 at 993.820 kb on - strand, within HP15_983 at 993.820 kb on - strand, within HP15_983 at 993.891 kb on - strand, within HP15_983 at 993.891 kb on - strand, within HP15_983 at 993.895 kb on + strand, within HP15_983 at 993.914 kb on + strand, within HP15_983 at 993.959 kb on + strand at 993.978 kb on - strand at 993.980 kb on + strand at 993.985 kb on + strand at 993.985 kb on + strand at 993.993 kb on - strand at 994.014 kb on - strand at 994.296 kb on + strand, within HP15_984 at 994.296 kb on + strand, within HP15_984 at 994.367 kb on + strand, within HP15_984 at 994.375 kb on - strand, within HP15_984 at 994.388 kb on - strand, within HP15_984 at 994.533 kb on - strand, within HP15_984 at 994.571 kb on - strand, within HP15_984 at 994.690 kb on - strand, within HP15_984 at 994.754 kb on + strand, within HP15_984 at 994.800 kb on - strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.850 kb on + strand, within HP15_984 at 995.100 kb on + strand, within HP15_985 at 995.199 kb on + strand, within HP15_985 at 995.246 kb on + strand, within HP15_985 at 995.337 kb on - strand, within HP15_985 at 995.416 kb on + strand at 995.438 kb on - strand at 995.456 kb on - strand at 995.478 kb on - strand at 995.518 kb on - strand at 995.690 kb on - strand, within HP15_986 at 995.713 kb on - strand, within HP15_986 at 995.813 kb on - strand, within HP15_986 at 995.900 kb on + strand, within HP15_986 at 995.916 kb on + strand, within HP15_986
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 993,092 - +0.1 993,128 - +0.4 993,177 + -1.4 993,177 + -0.3 993,220 - +0.7 993,242 + -0.4 993,250 - -0.5 993,254 + -0.0 993,490 + +0.8 993,540 + HP15_983 0.14 +0.7 993,766 + HP15_983 0.59 -0.1 993,792 + HP15_983 0.64 +0.6 993,792 + HP15_983 0.64 -0.5 993,800 - HP15_983 0.65 -0.3 993,800 - HP15_983 0.65 -1.1 993,800 - HP15_983 0.65 +0.7 993,807 + HP15_983 0.67 -0.2 993,815 - HP15_983 0.68 +0.4 993,820 - HP15_983 0.69 +0.1 993,820 - HP15_983 0.69 -0.4 993,891 - HP15_983 0.83 +2.2 993,891 - HP15_983 0.83 -0.1 993,895 + HP15_983 0.84 -0.0 993,914 + HP15_983 0.88 -0.4 993,959 + -0.5 993,978 - +1.9 993,980 + +0.1 993,985 + +0.2 993,985 + -0.5 993,993 - -0.6 994,014 - +1.1 994,296 + HP15_984 0.26 +1.1 994,296 + HP15_984 0.26 -0.4 994,367 + HP15_984 0.34 +0.2 994,375 - HP15_984 0.35 +0.1 994,388 - HP15_984 0.37 +0.9 994,533 - HP15_984 0.53 -0.5 994,571 - HP15_984 0.58 +1.5 994,690 - HP15_984 0.71 -0.3 994,754 + HP15_984 0.79 +0.0 994,800 - HP15_984 0.84 -0.5 994,818 + HP15_984 0.86 +0.1 994,818 + HP15_984 0.86 +0.7 994,818 + HP15_984 0.86 +1.3 994,818 + HP15_984 0.86 +0.5 994,826 - HP15_984 0.87 -0.2 994,826 - HP15_984 0.87 +0.7 994,826 - HP15_984 0.87 -0.4 994,850 + HP15_984 0.90 -0.2 995,100 + HP15_985 0.14 -0.3 995,199 + HP15_985 0.42 -0.2 995,246 + HP15_985 0.55 -0.5 995,337 - HP15_985 0.81 +0.4 995,416 + +0.1 995,438 - +0.2 995,456 - -0.1 995,478 - +0.1 995,518 - -0.2 995,690 - HP15_986 0.24 +0.8 995,713 - HP15_986 0.26 -0.6 995,813 - HP15_986 0.34 +0.2 995,900 + HP15_986 0.41 -1.2 995,916 + HP15_986 0.43 -0.5
Or see this region's nucleotide sequence