Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33220

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33215 and AZOBR_RS33220 overlap by 4 nucleotidesAZOBR_RS33220 and AZOBR_RS33225 are separated by 371 nucleotides AZOBR_RS33215: AZOBR_RS33215 - hypothetical protein, at 145,300 to 146,700 _RS33215 AZOBR_RS33220: AZOBR_RS33220 - hypothetical protein, at 146,697 to 148,736 _RS33220 AZOBR_RS33225: AZOBR_RS33225 - hypothetical protein, at 149,108 to 149,368 _RS33225 Position (kb) 146 147 148 149Strain fitness (log2 ratio) -2 -1 0 1at 146.153 kb on - strand, within AZOBR_RS33215at 147.166 kb on - strand, within AZOBR_RS33220at 147.292 kb on - strand, within AZOBR_RS33220at 147.292 kb on - strand, within AZOBR_RS33220at 147.388 kb on - strand, within AZOBR_RS33220at 147.388 kb on - strand, within AZOBR_RS33220at 147.388 kb on - strand, within AZOBR_RS33220at 147.498 kb on + strand, within AZOBR_RS33220at 147.499 kb on - strand, within AZOBR_RS33220at 147.499 kb on - strand, within AZOBR_RS33220at 147.925 kb on - strand, within AZOBR_RS33220at 148.362 kb on + strand, within AZOBR_RS33220at 148.362 kb on + strand, within AZOBR_RS33220at 148.384 kb on - strand, within AZOBR_RS33220at 148.528 kb on + strand, within AZOBR_RS33220at 148.529 kb on - strand, within AZOBR_RS33220at 148.565 kb on - strandat 148.709 kb on - strandat 148.709 kb on - strandat 148.709 kb on - strandat 148.709 kb on - strandat 148.798 kb on + strandat 148.850 kb on - strandat 148.850 kb on - strandat 149.039 kb on + strandat 149.092 kb on + strandat 149.092 kb on + strandat 149.093 kb on - strandat 149.255 kb on + strand, within AZOBR_RS33225at 149.255 kb on + strand, within AZOBR_RS33225at 149.524 kb on - strandat 149.653 kb on + strandat 149.710 kb on + strandat 149.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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146,153 - AZOBR_RS33215 0.61 +0.2
147,166 - AZOBR_RS33220 0.23 -1.8
147,292 - AZOBR_RS33220 0.29 -0.2
147,292 - AZOBR_RS33220 0.29 -0.4
147,388 - AZOBR_RS33220 0.34 -0.9
147,388 - AZOBR_RS33220 0.34 -1.0
147,388 - AZOBR_RS33220 0.34 +0.3
147,498 + AZOBR_RS33220 0.39 -0.5
147,499 - AZOBR_RS33220 0.39 -0.5
147,499 - AZOBR_RS33220 0.39 -0.2
147,925 - AZOBR_RS33220 0.60 -0.4
148,362 + AZOBR_RS33220 0.82 +0.1
148,362 + AZOBR_RS33220 0.82 +1.3
148,384 - AZOBR_RS33220 0.83 +0.1
148,528 + AZOBR_RS33220 0.90 -0.2
148,529 - AZOBR_RS33220 0.90 +0.3
148,565 - +0.9
148,709 - +0.3
148,709 - +0.9
148,709 - +0.2
148,709 - -0.1
148,798 + +0.4
148,850 - -1.2
148,850 - +0.2
149,039 + -0.7
149,092 + +0.3
149,092 + +1.1
149,093 - -1.2
149,255 + AZOBR_RS33225 0.56 -0.1
149,255 + AZOBR_RS33225 0.56 -0.6
149,524 - -0.1
149,653 + +0.6
149,710 + -0.2
149,711 - +0.1

Or see this region's nucleotide sequence