Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22445

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22440 and AZOBR_RS22445 are separated by 248 nucleotidesAZOBR_RS22445 and AZOBR_RS22450 are separated by 63 nucleotides AZOBR_RS22440: AZOBR_RS22440 - glycosyl transferase, at 44,748 to 46,061 _RS22440 AZOBR_RS22445: AZOBR_RS22445 - hypothetical protein, at 46,310 to 47,353 _RS22445 AZOBR_RS22450: AZOBR_RS22450 - hypothetical protein, at 47,417 to 48,604 _RS22450 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1 2at 45.321 kb on + strand, within AZOBR_RS22440at 45.321 kb on + strand, within AZOBR_RS22440at 45.322 kb on - strand, within AZOBR_RS22440at 45.354 kb on + strand, within AZOBR_RS22440at 45.354 kb on + strand, within AZOBR_RS22440at 45.355 kb on - strand, within AZOBR_RS22440at 45.660 kb on + strand, within AZOBR_RS22440at 45.661 kb on - strand, within AZOBR_RS22440at 45.669 kb on + strandat 45.669 kb on + strand, within AZOBR_RS22440at 45.669 kb on + strand, within AZOBR_RS22440at 46.064 kb on + strandat 46.064 kb on + strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.065 kb on - strandat 46.193 kb on + strandat 46.520 kb on + strand, within AZOBR_RS22445at 46.520 kb on + strand, within AZOBR_RS22445at 46.565 kb on + strand, within AZOBR_RS22445at 46.566 kb on - strand, within AZOBR_RS22445at 46.607 kb on + strand, within AZOBR_RS22445at 46.607 kb on + strand, within AZOBR_RS22445at 46.607 kb on + strand, within AZOBR_RS22445at 46.607 kb on + strand, within AZOBR_RS22445at 46.608 kb on - strand, within AZOBR_RS22445at 46.608 kb on - strand, within AZOBR_RS22445at 46.683 kb on - strand, within AZOBR_RS22445at 46.775 kb on + strand, within AZOBR_RS22445at 46.779 kb on - strand, within AZOBR_RS22445at 46.914 kb on - strand, within AZOBR_RS22445at 46.914 kb on - strand, within AZOBR_RS22445at 46.914 kb on - strand, within AZOBR_RS22445at 46.914 kb on - strand, within AZOBR_RS22445at 47.021 kb on + strand, within AZOBR_RS22445at 47.021 kb on + strand, within AZOBR_RS22445at 47.022 kb on - strand, within AZOBR_RS22445at 47.022 kb on - strand, within AZOBR_RS22445at 47.022 kb on - strand, within AZOBR_RS22445at 47.186 kb on + strand, within AZOBR_RS22445at 47.186 kb on + strand, within AZOBR_RS22445at 47.186 kb on + strand, within AZOBR_RS22445at 47.187 kb on - strand, within AZOBR_RS22445at 47.187 kb on - strand, within AZOBR_RS22445at 47.189 kb on + strand, within AZOBR_RS22445at 47.430 kb on + strandat 47.431 kb on - strandat 47.504 kb on - strandat 47.504 kb on - strandat 47.645 kb on + strand, within AZOBR_RS22450at 47.645 kb on + strand, within AZOBR_RS22450at 47.645 kb on + strand, within AZOBR_RS22450at 47.646 kb on - strand, within AZOBR_RS22450at 47.670 kb on - strand, within AZOBR_RS22450at 47.670 kb on - strand, within AZOBR_RS22450at 47.670 kb on - strand, within AZOBR_RS22450at 47.858 kb on + strand, within AZOBR_RS22450at 47.859 kb on - strand, within AZOBR_RS22450at 47.859 kb on - strand, within AZOBR_RS22450at 47.859 kb on - strand, within AZOBR_RS22450at 47.859 kb on - strand, within AZOBR_RS22450at 48.020 kb on + strand, within AZOBR_RS22450at 48.021 kb on - strand, within AZOBR_RS22450at 48.041 kb on + strand, within AZOBR_RS22450at 48.041 kb on + strand, within AZOBR_RS22450at 48.042 kb on - strand, within AZOBR_RS22450at 48.042 kb on - strand, within AZOBR_RS22450at 48.207 kb on - strand, within AZOBR_RS22450at 48.234 kb on - strand, within AZOBR_RS22450at 48.252 kb on - strand, within AZOBR_RS22450at 48.273 kb on - strand, within AZOBR_RS22450

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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45,321 + AZOBR_RS22440 0.44 +0.0
45,321 + AZOBR_RS22440 0.44 -0.0
45,322 - AZOBR_RS22440 0.44 -0.2
45,354 + AZOBR_RS22440 0.46 -0.0
45,354 + AZOBR_RS22440 0.46 -0.3
45,355 - AZOBR_RS22440 0.46 +1.7
45,660 + AZOBR_RS22440 0.69 -1.7
45,661 - AZOBR_RS22440 0.69 -0.4
45,669 + +0.1
45,669 + AZOBR_RS22440 0.70 -0.0
45,669 + AZOBR_RS22440 0.70 -0.2
46,064 + -0.3
46,064 + -0.5
46,065 - -0.1
46,065 - -0.6
46,065 - +0.5
46,065 - +1.5
46,065 - +0.9
46,065 - -0.1
46,065 - -0.9
46,065 - +0.0
46,193 + -1.7
46,520 + AZOBR_RS22445 0.20 -0.2
46,520 + AZOBR_RS22445 0.20 +1.2
46,565 + AZOBR_RS22445 0.24 +1.1
46,566 - AZOBR_RS22445 0.25 +0.4
46,607 + AZOBR_RS22445 0.28 -0.2
46,607 + AZOBR_RS22445 0.28 -0.3
46,607 + AZOBR_RS22445 0.28 -0.1
46,607 + AZOBR_RS22445 0.28 +0.3
46,608 - AZOBR_RS22445 0.29 -0.4
46,608 - AZOBR_RS22445 0.29 -0.7
46,683 - AZOBR_RS22445 0.36 -0.2
46,775 + AZOBR_RS22445 0.45 +0.5
46,779 - AZOBR_RS22445 0.45 +1.2
46,914 - AZOBR_RS22445 0.58 +1.3
46,914 - AZOBR_RS22445 0.58 +0.3
46,914 - AZOBR_RS22445 0.58 -1.3
46,914 - AZOBR_RS22445 0.58 -0.4
47,021 + AZOBR_RS22445 0.68 -0.2
47,021 + AZOBR_RS22445 0.68 +2.1
47,022 - AZOBR_RS22445 0.68 +0.2
47,022 - AZOBR_RS22445 0.68 -0.1
47,022 - AZOBR_RS22445 0.68 +0.6
47,186 + AZOBR_RS22445 0.84 +0.7
47,186 + AZOBR_RS22445 0.84 -0.6
47,186 + AZOBR_RS22445 0.84 +0.7
47,187 - AZOBR_RS22445 0.84 +0.5
47,187 - AZOBR_RS22445 0.84 -0.2
47,189 + AZOBR_RS22445 0.84 +0.5
47,430 + +0.2
47,431 - -0.2
47,504 - -0.3
47,504 - -0.9
47,645 + AZOBR_RS22450 0.19 -0.3
47,645 + AZOBR_RS22450 0.19 +1.5
47,645 + AZOBR_RS22450 0.19 -0.4
47,646 - AZOBR_RS22450 0.19 -0.3
47,670 - AZOBR_RS22450 0.21 -0.5
47,670 - AZOBR_RS22450 0.21 -0.5
47,670 - AZOBR_RS22450 0.21 -0.1
47,858 + AZOBR_RS22450 0.37 +1.1
47,859 - AZOBR_RS22450 0.37 -0.0
47,859 - AZOBR_RS22450 0.37 +0.9
47,859 - AZOBR_RS22450 0.37 +0.5
47,859 - AZOBR_RS22450 0.37 +1.4
48,020 + AZOBR_RS22450 0.51 -0.0
48,021 - AZOBR_RS22450 0.51 -1.4
48,041 + AZOBR_RS22450 0.53 +0.1
48,041 + AZOBR_RS22450 0.53 -0.0
48,042 - AZOBR_RS22450 0.53 -0.4
48,042 - AZOBR_RS22450 0.53 -0.8
48,207 - AZOBR_RS22450 0.66 -0.4
48,234 - AZOBR_RS22450 0.69 -0.5
48,252 - AZOBR_RS22450 0.70 +2.1
48,273 - AZOBR_RS22450 0.72 +0.1

Or see this region's nucleotide sequence