Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22310

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22310 and AZOBR_RS22315 are separated by 234 nucleotides AZOBR_RS22310: AZOBR_RS22310 - isovaleryl-CoA dehydrogenase, at 10,785 to 11,957 _RS22310 AZOBR_RS22315: AZOBR_RS22315 - aldehyde dehydrogenase, at 12,192 to 13,685 _RS22315 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1 2 3at 10.210 kb on - strandat 10.379 kb on - strandat 10.859 kb on - strandat 11.041 kb on + strand, within AZOBR_RS22310at 11.068 kb on + strand, within AZOBR_RS22310at 11.069 kb on - strand, within AZOBR_RS22310at 11.069 kb on - strand, within AZOBR_RS22310at 11.069 kb on - strand, within AZOBR_RS22310at 11.213 kb on - strand, within AZOBR_RS22310at 11.429 kb on - strand, within AZOBR_RS22310at 11.958 kb on - strandat 12.059 kb on - strandat 12.059 kb on - strandat 12.449 kb on - strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.631 kb on + strand, within AZOBR_RS22315at 12.631 kb on + strand, within AZOBR_RS22315at 12.632 kb on - strand, within AZOBR_RS22315at 12.632 kb on - strand, within AZOBR_RS22315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
remove
10,210 - -0.3
10,379 - -0.5
10,859 - -0.8
11,041 + AZOBR_RS22310 0.22 +0.1
11,068 + AZOBR_RS22310 0.24 +3.1
11,069 - AZOBR_RS22310 0.24 +1.1
11,069 - AZOBR_RS22310 0.24 -0.0
11,069 - AZOBR_RS22310 0.24 -0.4
11,213 - AZOBR_RS22310 0.36 +1.1
11,429 - AZOBR_RS22310 0.55 -0.3
11,958 - +1.5
12,059 - +0.4
12,059 - -1.2
12,449 - AZOBR_RS22315 0.17 +0.9
12,547 + AZOBR_RS22315 0.24 -0.1
12,547 + AZOBR_RS22315 0.24 +0.2
12,547 + AZOBR_RS22315 0.24 -0.0
12,548 - AZOBR_RS22315 0.24 +0.1
12,548 - AZOBR_RS22315 0.24 -0.6
12,548 - AZOBR_RS22315 0.24 -0.4
12,631 + AZOBR_RS22315 0.29 -0.2
12,631 + AZOBR_RS22315 0.29 -0.1
12,632 - AZOBR_RS22315 0.29 -0.6
12,632 - AZOBR_RS22315 0.29 -0.4

Or see this region's nucleotide sequence