Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08175

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08170 and AZOBR_RS08175 are separated by 354 nucleotidesAZOBR_RS08175 and AZOBR_RS08180 are separated by 97 nucleotides AZOBR_RS08170: AZOBR_RS08170 - carbon-nitrogen family hydrolase, at 1,721,688 to 1,722,584 _RS08170 AZOBR_RS08175: AZOBR_RS08175 - transcriptional regulator, at 1,722,939 to 1,723,451 _RS08175 AZOBR_RS08180: AZOBR_RS08180 - hypothetical protein, at 1,723,549 to 1,724,859 _RS08180 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -2 -1 0 1 2at 1722.047 kb on - strand, within AZOBR_RS08170at 1722.137 kb on - strand, within AZOBR_RS08170at 1722.149 kb on - strand, within AZOBR_RS08170at 1722.149 kb on - strand, within AZOBR_RS08170at 1722.184 kb on + strand, within AZOBR_RS08170at 1722.185 kb on - strand, within AZOBR_RS08170at 1722.229 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.278 kb on - strand, within AZOBR_RS08170at 1722.278 kb on - strand, within AZOBR_RS08170at 1722.280 kb on + strand, within AZOBR_RS08170at 1722.280 kb on + strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.584 kb on + strandat 1722.766 kb on + strandat 1722.767 kb on - strandat 1722.783 kb on - strandat 1722.896 kb on - strandat 1723.147 kb on - strand, within AZOBR_RS08175at 1723.311 kb on + strand, within AZOBR_RS08175at 1723.311 kb on + strand, within AZOBR_RS08175at 1723.789 kb on + strand, within AZOBR_RS08180at 1723.789 kb on + strand, within AZOBR_RS08180at 1723.789 kb on + strand, within AZOBR_RS08180at 1723.790 kb on - strand, within AZOBR_RS08180at 1723.790 kb on - strand, within AZOBR_RS08180at 1723.790 kb on - strand, within AZOBR_RS08180at 1723.790 kb on - strand, within AZOBR_RS08180at 1723.790 kb on - strand, within AZOBR_RS08180at 1724.075 kb on + strand, within AZOBR_RS08180at 1724.075 kb on + strand, within AZOBR_RS08180at 1724.075 kb on + strand, within AZOBR_RS08180at 1724.075 kb on + strand, within AZOBR_RS08180at 1724.076 kb on - strand, within AZOBR_RS08180

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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1,722,047 - AZOBR_RS08170 0.40 -0.0
1,722,137 - AZOBR_RS08170 0.50 -0.1
1,722,149 - AZOBR_RS08170 0.51 -1.6
1,722,149 - AZOBR_RS08170 0.51 +1.7
1,722,184 + AZOBR_RS08170 0.55 +0.1
1,722,185 - AZOBR_RS08170 0.55 +0.4
1,722,229 + AZOBR_RS08170 0.60 -1.4
1,722,277 + AZOBR_RS08170 0.66 -0.0
1,722,277 + AZOBR_RS08170 0.66 -0.2
1,722,277 + AZOBR_RS08170 0.66 +0.5
1,722,278 - AZOBR_RS08170 0.66 -1.1
1,722,278 - AZOBR_RS08170 0.66 +1.5
1,722,280 + AZOBR_RS08170 0.66 +1.1
1,722,280 + AZOBR_RS08170 0.66 +0.1
1,722,425 - AZOBR_RS08170 0.82 +1.1
1,722,425 - AZOBR_RS08170 0.82 +1.3
1,722,425 - AZOBR_RS08170 0.82 +2.1
1,722,584 + +0.3
1,722,766 + +1.9
1,722,767 - -0.1
1,722,783 - +0.0
1,722,896 - +0.2
1,723,147 - AZOBR_RS08175 0.41 -1.2
1,723,311 + AZOBR_RS08175 0.73 -1.8
1,723,311 + AZOBR_RS08175 0.73 -0.3
1,723,789 + AZOBR_RS08180 0.18 -1.3
1,723,789 + AZOBR_RS08180 0.18 -1.6
1,723,789 + AZOBR_RS08180 0.18 +1.1
1,723,790 - AZOBR_RS08180 0.18 -0.6
1,723,790 - AZOBR_RS08180 0.18 +0.1
1,723,790 - AZOBR_RS08180 0.18 -0.6
1,723,790 - AZOBR_RS08180 0.18 -0.2
1,723,790 - AZOBR_RS08180 0.18 +0.4
1,724,075 + AZOBR_RS08180 0.40 +0.8
1,724,075 + AZOBR_RS08180 0.40 +0.3
1,724,075 + AZOBR_RS08180 0.40 +1.1
1,724,075 + AZOBR_RS08180 0.40 +0.5
1,724,076 - AZOBR_RS08180 0.40 +0.1

Or see this region's nucleotide sequence