Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07520

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07510 and AZOBR_RS07515 are separated by 143 nucleotidesAZOBR_RS07515 and AZOBR_RS07520 are separated by 103 nucleotidesAZOBR_RS07520 and AZOBR_RS07525 are separated by 106 nucleotidesAZOBR_RS07525 and AZOBR_RS07530 are separated by 118 nucleotides AZOBR_RS07510: AZOBR_RS07510 - CTP synthase, at 1,580,204 to 1,581,832 _RS07510 AZOBR_RS07515: AZOBR_RS07515 - carboxymethylenebutenolidase, at 1,581,976 to 1,582,674 _RS07515 AZOBR_RS07520: AZOBR_RS07520 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,582,778 to 1,583,605 _RS07520 AZOBR_RS07525: AZOBR_RS07525 - DNA-binding protein, at 1,583,712 to 1,584,098 _RS07525 AZOBR_RS07530: AZOBR_RS07530 - pyrroloquinoline quinone biosynthesis protein PqqE, at 1,584,217 to 1,585,323 _RS07530 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1581.896 kb on + strandat 1581.896 kb on + strandat 1581.897 kb on - strandat 1581.897 kb on - strandat 1581.897 kb on - strandat 1581.939 kb on - strandat 1582.025 kb on - strandat 1582.025 kb on - strandat 1582.025 kb on - strandat 1582.102 kb on - strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.406 kb on - strand, within AZOBR_RS07515at 1582.561 kb on + strand, within AZOBR_RS07515at 1584.069 kb on + strandat 1584.070 kb on - strandat 1584.070 kb on - strandat 1584.070 kb on - strandat 1584.197 kb on + strandat 1584.197 kb on + strandat 1584.197 kb on + strandat 1584.197 kb on + strandat 1584.198 kb on - strandat 1584.198 kb on - strandat 1584.198 kb on - strandat 1584.198 kb on - strandat 1584.437 kb on + strand, within AZOBR_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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1,581,896 + +0.3
1,581,896 + +0.6
1,581,897 - +0.2
1,581,897 - -0.2
1,581,897 - +0.9
1,581,939 - -0.1
1,582,025 - +0.2
1,582,025 - -0.8
1,582,025 - -0.3
1,582,102 - AZOBR_RS07515 0.18 +0.2
1,582,402 + AZOBR_RS07515 0.61 -0.4
1,582,402 + AZOBR_RS07515 0.61 -0.3
1,582,402 + AZOBR_RS07515 0.61 -0.4
1,582,406 - AZOBR_RS07515 0.62 +0.8
1,582,561 + AZOBR_RS07515 0.84 +0.9
1,584,069 + -0.1
1,584,070 - +0.0
1,584,070 - +0.3
1,584,070 - -0.6
1,584,197 + +0.2
1,584,197 + -0.0
1,584,197 + -0.1
1,584,197 + -0.6
1,584,198 - +0.6
1,584,198 - +3.1
1,584,198 - -0.4
1,584,198 - +0.1
1,584,437 + AZOBR_RS07530 0.20 -2.6

Or see this region's nucleotide sequence