Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06545

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06540 and AZOBR_RS06545 are separated by 357 nucleotidesAZOBR_RS06545 and AZOBR_RS06550 are separated by 122 nucleotides AZOBR_RS06540: AZOBR_RS06540 - phosphoserine phosphatase, at 1,384,945 to 1,385,856 _RS06540 AZOBR_RS06545: AZOBR_RS06545 - hypothetical protein, at 1,386,214 to 1,386,510 _RS06545 AZOBR_RS06550: AZOBR_RS06550 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 1,386,633 to 1,387,595 _RS06550 Position (kb) 1386 1387Strain fitness (log2 ratio) -1 0 1at 1385.950 kb on - strandat 1386.045 kb on + strandat 1386.130 kb on + strandat 1386.130 kb on + strandat 1386.442 kb on + strand, within AZOBR_RS06545at 1386.442 kb on + strand, within AZOBR_RS06545at 1386.443 kb on - strand, within AZOBR_RS06545at 1386.443 kb on - strand, within AZOBR_RS06545at 1386.568 kb on + strandat 1386.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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1,385,950 - -0.0
1,386,045 + -1.5
1,386,130 + -0.0
1,386,130 + +0.1
1,386,442 + AZOBR_RS06545 0.77 +0.2
1,386,442 + AZOBR_RS06545 0.77 -0.7
1,386,443 - AZOBR_RS06545 0.77 -1.1
1,386,443 - AZOBR_RS06545 0.77 -0.2
1,386,568 + +1.1
1,386,568 + -1.2

Or see this region's nucleotide sequence