Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21380

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21370 and AZOBR_RS21375 are separated by 117 nucleotidesAZOBR_RS21375 and AZOBR_RS21380 are separated by 102 nucleotidesAZOBR_RS21380 and AZOBR_RS21385 are separated by 455 nucleotides AZOBR_RS21370: AZOBR_RS21370 - conserved membrane protein of unknown function, at 1,576,209 to 1,577,108 _RS21370 AZOBR_RS21375: AZOBR_RS21375 - acyl carrier protein, at 1,577,226 to 1,577,564 _RS21375 AZOBR_RS21380: AZOBR_RS21380 - hypothetical protein, at 1,577,667 to 1,578,095 _RS21380 AZOBR_RS21385: AZOBR_RS21385 - 16S ribosomal RNA, at 1,578,551 to 1,580,045 _RS21385 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -2 -1 0 1 2at 1576.856 kb on - strand, within AZOBR_RS21370at 1577.032 kb on - strandat 1577.095 kb on + strandat 1577.095 kb on + strandat 1577.120 kb on + strandat 1577.120 kb on + strandat 1577.120 kb on + strandat 1577.120 kb on + strandat 1577.121 kb on - strandat 1577.121 kb on - strandat 1577.121 kb on - strandat 1577.209 kb on + strandat 1577.226 kb on - strandat 1577.832 kb on + strand, within AZOBR_RS21380at 1577.832 kb on + strand, within AZOBR_RS21380at 1577.833 kb on - strand, within AZOBR_RS21380at 1577.833 kb on - strand, within AZOBR_RS21380at 1577.833 kb on - strand, within AZOBR_RS21380at 1577.988 kb on + strand, within AZOBR_RS21380at 1577.989 kb on - strand, within AZOBR_RS21380at 1578.094 kb on - strandat 1578.201 kb on + strandat 1578.201 kb on + strandat 1578.202 kb on - strandat 1578.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,576,856 - AZOBR_RS21370 0.72 -0.1
1,577,032 - -2.1
1,577,095 + -0.3
1,577,095 + +0.1
1,577,120 + -0.1
1,577,120 + +0.2
1,577,120 + -0.6
1,577,120 + +0.3
1,577,121 - -0.0
1,577,121 - +2.0
1,577,121 - +0.4
1,577,209 + -0.5
1,577,226 - +2.0
1,577,832 + AZOBR_RS21380 0.38 +0.6
1,577,832 + AZOBR_RS21380 0.38 -0.4
1,577,833 - AZOBR_RS21380 0.39 +0.7
1,577,833 - AZOBR_RS21380 0.39 +0.6
1,577,833 - AZOBR_RS21380 0.39 -1.0
1,577,988 + AZOBR_RS21380 0.75 -0.1
1,577,989 - AZOBR_RS21380 0.75 +0.0
1,578,094 - -1.3
1,578,201 + +1.2
1,578,201 + -1.1
1,578,202 - +0.4
1,578,202 - -0.3

Or see this region's nucleotide sequence