Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09050

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS09045 and AZOBR_RS09050 overlap by 4 nucleotidesAZOBR_RS09050 and AZOBR_RS09055 are separated by 10 nucleotidesAZOBR_RS09055 and AZOBR_RS09060 are separated by 5 nucleotides AZOBR_RS09045: AZOBR_RS09045 - Holliday junction DNA helicase RuvA, at 1,890,513 to 1,891,142 _RS09045 AZOBR_RS09050: AZOBR_RS09050 - Holliday junction DNA helicase RuvB, at 1,891,139 to 1,892,230 _RS09050 AZOBR_RS09055: AZOBR_RS09055 - acyl-CoA thioester hydrolase, at 1,892,241 to 1,892,702 _RS09055 AZOBR_RS09060: AZOBR_RS09060 - biopolymer transporter ExbB, at 1,892,708 to 1,893,430 _RS09060 Position (kb) 1891 1892 1893Strain fitness (log2 ratio) -2 -1 0 1at 1890.191 kb on + strandat 1891.955 kb on + strand, within AZOBR_RS09050at 1891.979 kb on + strandat 1892.301 kb on + strand, within AZOBR_RS09055at 1892.304 kb on + strand, within AZOBR_RS09055at 1892.305 kb on - strand, within AZOBR_RS09055at 1892.334 kb on + strand, within AZOBR_RS09055at 1892.334 kb on + strand, within AZOBR_RS09055at 1892.346 kb on + strand, within AZOBR_RS09055at 1892.346 kb on + strand, within AZOBR_RS09055at 1892.347 kb on - strand, within AZOBR_RS09055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
remove
1,890,191 + +0.0
1,891,955 + AZOBR_RS09050 0.75 -1.8
1,891,979 + -0.1
1,892,301 + AZOBR_RS09055 0.13 -1.0
1,892,304 + AZOBR_RS09055 0.14 -0.4
1,892,305 - AZOBR_RS09055 0.14 -1.2
1,892,334 + AZOBR_RS09055 0.20 -2.4
1,892,334 + AZOBR_RS09055 0.20 -0.7
1,892,346 + AZOBR_RS09055 0.23 +0.0
1,892,346 + AZOBR_RS09055 0.23 +0.3
1,892,347 - AZOBR_RS09055 0.23 -0.7

Or see this region's nucleotide sequence