Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03380

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotidesAZOBR_RS03380 and AZOBR_RS03385 are separated by 230 nucleotides AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191 _RS03375 AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600 _RS03380 AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276 _RS03385 Position (kb) 716 717 718Strain fitness (log2 ratio) -1 0 1at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.651 kb on - strand, within AZOBR_RS03375at 715.743 kb on + strand, within AZOBR_RS03375at 715.750 kb on - strand, within AZOBR_RS03375at 715.822 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 716.179 kb on - strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.957 kb on + strand, within AZOBR_RS03380at 716.957 kb on + strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 717.549 kb on - strandat 717.549 kb on - strandat 717.600 kb on + strandat 717.600 kb on + strandat 717.600 kb on + strandat 717.601 kb on - strandat 717.601 kb on - strandat 717.618 kb on + strandat 717.618 kb on + strandat 717.619 kb on - strandat 717.905 kb on - strandat 718.051 kb on + strand, within AZOBR_RS03385at 718.051 kb on + strand, within AZOBR_RS03385at 718.052 kb on - strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.415 kb on - strand, within AZOBR_RS03385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
remove
715,452 + AZOBR_RS03375 0.26 +0.0
715,452 + AZOBR_RS03375 0.26 -0.1
715,452 + AZOBR_RS03375 0.26 -0.8
715,452 + AZOBR_RS03375 0.26 -0.2
715,452 + AZOBR_RS03375 0.26 +0.5
715,452 + AZOBR_RS03375 0.26 -0.2
715,452 + AZOBR_RS03375 0.26 +0.6
715,453 - AZOBR_RS03375 0.26 +0.7
715,453 - AZOBR_RS03375 0.26 +0.7
715,453 - AZOBR_RS03375 0.26 -0.3
715,453 - AZOBR_RS03375 0.26 +0.0
715,651 - AZOBR_RS03375 0.46 -0.0
715,743 + AZOBR_RS03375 0.55 -1.1
715,750 - AZOBR_RS03375 0.56 -0.0
715,822 - AZOBR_RS03375 0.63 +0.5
715,936 - AZOBR_RS03375 0.74 +0.1
715,936 - AZOBR_RS03375 0.74 -0.2
715,936 - AZOBR_RS03375 0.74 -0.1
716,179 - +0.1
716,351 + -1.4
716,351 + -0.5
716,351 + +0.1
716,352 - -0.6
716,352 - +0.8
716,352 - +0.1
716,352 - -0.2
716,957 + AZOBR_RS03380 0.53 -0.3
716,957 + AZOBR_RS03380 0.53 +0.3
716,958 - AZOBR_RS03380 0.53 -0.2
716,958 - AZOBR_RS03380 0.53 -0.9
716,958 - AZOBR_RS03380 0.53 +0.1
717,549 - -0.5
717,549 - +0.3
717,600 + +1.0
717,600 + -1.6
717,600 + +1.0
717,601 - -0.4
717,601 - +0.1
717,618 + -0.1
717,618 + +0.2
717,619 - +0.7
717,905 - -0.1
718,051 + AZOBR_RS03385 0.15 +0.4
718,051 + AZOBR_RS03385 0.15 -0.2
718,052 - AZOBR_RS03385 0.15 -0.1
718,213 + AZOBR_RS03385 0.26 +0.1
718,213 + AZOBR_RS03385 0.26 -0.5
718,213 + AZOBR_RS03385 0.26 -0.1
718,213 + AZOBR_RS03385 0.26 +0.1
718,214 - AZOBR_RS03385 0.26 -0.0
718,214 - AZOBR_RS03385 0.26 +0.6
718,214 - AZOBR_RS03385 0.26 +0.6
718,415 - AZOBR_RS03385 0.40 +0.2

Or see this region's nucleotide sequence