Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00095

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00090 and AZOBR_RS00095 are separated by 141 nucleotidesAZOBR_RS00095 and AZOBR_RS00100 are separated by 49 nucleotidesAZOBR_RS00100 and AZOBR_RS00105 are separated by 442 nucleotides AZOBR_RS00090: AZOBR_RS00090 - hypothetical protein, at 7,368 to 8,156 _RS00090 AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482 _RS00095 AZOBR_RS00100: AZOBR_RS00100 - membrane protein, at 9,532 to 9,975 _RS00100 AZOBR_RS00105: AZOBR_RS00105 - ornithine decarboxylase, at 10,418 to 11,554 _RS00105 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2 3at 7.310 kb on - strandat 7.310 kb on - strandat 7.392 kb on + strandat 7.394 kb on + strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.403 kb on + strandat 7.404 kb on - strandat 7.404 kb on - strandat 7.710 kb on + strand, within AZOBR_RS00090at 7.710 kb on + strand, within AZOBR_RS00090at 7.710 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.014 kb on - strand, within AZOBR_RS00090at 8.014 kb on - strand, within AZOBR_RS00090at 8.258 kb on - strandat 8.377 kb on - strandat 8.377 kb on - strandat 8.485 kb on - strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.704 kb on - strand, within AZOBR_RS00095at 8.907 kb on + strand, within AZOBR_RS00095at 9.546 kb on - strandat 9.602 kb on + strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.798 kb on - strand, within AZOBR_RS00100at 9.989 kb on - strandat 10.046 kb on + strandat 10.067 kb on + strandat 10.068 kb on - strandat 10.068 kb on - strandat 10.144 kb on + strandat 10.144 kb on + strandat 10.145 kb on - strandat 10.169 kb on + strandat 10.170 kb on - strandat 10.193 kb on + strandat 10.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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7,310 - -0.2
7,310 - +0.1
7,392 + +0.3
7,394 + +0.1
7,395 - -0.5
7,395 - +0.3
7,395 - -1.3
7,395 - +1.0
7,403 + -0.9
7,404 - +0.1
7,404 - +0.5
7,710 + AZOBR_RS00090 0.43 -1.3
7,710 + AZOBR_RS00090 0.43 -0.5
7,710 + AZOBR_RS00090 0.43 -0.4
8,013 + AZOBR_RS00090 0.82 -0.1
8,013 + AZOBR_RS00090 0.82 -0.3
8,013 + AZOBR_RS00090 0.82 -0.3
8,014 - AZOBR_RS00090 0.82 -0.1
8,014 - AZOBR_RS00090 0.82 -0.3
8,258 - +0.1
8,377 - -0.2
8,377 - -0.1
8,485 - AZOBR_RS00095 0.16 +0.3
8,544 + AZOBR_RS00095 0.21 +0.3
8,544 + AZOBR_RS00095 0.21 +0.1
8,544 + AZOBR_RS00095 0.21 -0.4
8,703 + AZOBR_RS00095 0.34 +0.2
8,703 + AZOBR_RS00095 0.34 +3.1
8,704 - AZOBR_RS00095 0.34 -0.4
8,907 + AZOBR_RS00095 0.51 +1.4
9,546 - +0.1
9,602 + AZOBR_RS00100 0.16 -0.8
9,603 - AZOBR_RS00100 0.16 -0.6
9,603 - AZOBR_RS00100 0.16 +0.4
9,603 - AZOBR_RS00100 0.16 -1.1
9,603 - AZOBR_RS00100 0.16 +2.1
9,798 - AZOBR_RS00100 0.60 -0.3
9,989 - -1.3
10,046 + +2.1
10,067 + -1.1
10,068 - -0.3
10,068 - +0.5
10,144 + +0.1
10,144 + -0.3
10,145 - +2.1
10,169 + -0.8
10,170 - +1.1
10,193 + +0.3
10,426 + -0.8

Or see this region's nucleotide sequence