Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26190

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26185 and AZOBR_RS26190 are separated by 80 nucleotides AZOBR_RS26185: AZOBR_RS26185 - hypothetical protein, at 20,328 to 21,179 _RS26185 AZOBR_RS26190: AZOBR_RS26190 - glucosyl transferase, at 21,260 to 22,291 _RS26190 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1 2 3at 20.268 kb on + strandat 20.269 kb on - strandat 20.842 kb on + strand, within AZOBR_RS26185at 20.842 kb on + strand, within AZOBR_RS26185at 20.842 kb on + strand, within AZOBR_RS26185at 20.842 kb on + strand, within AZOBR_RS26185at 20.930 kb on + strand, within AZOBR_RS26185at 20.930 kb on + strand, within AZOBR_RS26185at 20.930 kb on + strand, within AZOBR_RS26185at 20.931 kb on - strand, within AZOBR_RS26185at 20.931 kb on - strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.051 kb on + strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.052 kb on - strand, within AZOBR_RS26185at 21.104 kb on - strandat 21.169 kb on + strandat 21.169 kb on + strandat 21.177 kb on + strandat 21.177 kb on + strandat 21.177 kb on + strandat 21.178 kb on - strandat 21.178 kb on - strandat 21.178 kb on - strandat 21.305 kb on + strandat 21.305 kb on + strandat 21.305 kb on + strandat 21.365 kb on - strand, within AZOBR_RS26190at 21.365 kb on - strand, within AZOBR_RS26190at 21.365 kb on - strand, within AZOBR_RS26190at 21.415 kb on + strand, within AZOBR_RS26190at 21.475 kb on + strand, within AZOBR_RS26190at 21.476 kb on - strand, within AZOBR_RS26190at 21.599 kb on + strand, within AZOBR_RS26190at 21.599 kb on + strand, within AZOBR_RS26190at 21.599 kb on + strand, within AZOBR_RS26190at 21.600 kb on - strand, within AZOBR_RS26190at 21.600 kb on - strand, within AZOBR_RS26190at 21.600 kb on - strand, within AZOBR_RS26190at 21.600 kb on - strand, within AZOBR_RS26190at 21.600 kb on - strand, within AZOBR_RS26190at 21.690 kb on + strand, within AZOBR_RS26190at 21.690 kb on + strand, within AZOBR_RS26190at 21.690 kb on + strand, within AZOBR_RS26190at 21.855 kb on + strand, within AZOBR_RS26190at 21.984 kb on - strand, within AZOBR_RS26190at 21.984 kb on - strand, within AZOBR_RS26190at 21.984 kb on - strand, within AZOBR_RS26190at 21.984 kb on - strand, within AZOBR_RS26190at 22.029 kb on - strand, within AZOBR_RS26190at 22.040 kb on + strand, within AZOBR_RS26190at 22.040 kb on + strand, within AZOBR_RS26190at 22.402 kb on + strandat 22.402 kb on + strandat 22.402 kb on + strandat 22.402 kb on + strandat 22.403 kb on - strandat 22.403 kb on - strandat 22.403 kb on - strandat 22.440 kb on + strandat 22.441 kb on - strandat 22.441 kb on - strandat 22.442 kb on + strandat 22.589 kb on - strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.697 kb on + strandat 22.697 kb on + strandat 22.697 kb on + strandat 22.697 kb on + strandat 22.697 kb on + strandat 22.698 kb on - strandat 22.698 kb on - strandat 22.702 kb on + strandat 22.702 kb on + strandat 22.703 kb on - strandat 22.703 kb on - strandat 22.709 kb on + strandat 22.710 kb on - strandat 22.758 kb on - strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.763 kb on + strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.764 kb on - strandat 22.944 kb on - strandat 22.986 kb on + strandat 23.183 kb on + strandat 23.184 kb on - strandat 23.184 kb on - strandat 23.184 kb on - strandat 23.185 kb on + strandat 23.186 kb on - strandat 23.213 kb on + strandat 23.213 kb on + strandat 23.213 kb on + strandat 23.214 kb on - strandat 23.214 kb on - strandat 23.259 kb on + strandat 23.259 kb on + strandat 23.259 kb on + strandat 23.275 kb on + strandat 23.275 kb on + strandat 23.276 kb on - strandat 23.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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20,268 + +0.0
20,269 - -0.2
20,842 + AZOBR_RS26185 0.60 +2.1
20,842 + AZOBR_RS26185 0.60 +2.1
20,842 + AZOBR_RS26185 0.60 +0.5
20,842 + AZOBR_RS26185 0.60 +1.5
20,930 + AZOBR_RS26185 0.71 -0.5
20,930 + AZOBR_RS26185 0.71 -0.4
20,930 + AZOBR_RS26185 0.71 +1.7
20,931 - AZOBR_RS26185 0.71 -1.6
20,931 - AZOBR_RS26185 0.71 -0.3
21,051 + AZOBR_RS26185 0.85 -0.1
21,051 + AZOBR_RS26185 0.85 +2.1
21,051 + AZOBR_RS26185 0.85 -0.2
21,051 + AZOBR_RS26185 0.85 +2.1
21,051 + AZOBR_RS26185 0.85 +0.5
21,051 + AZOBR_RS26185 0.85 -0.7
21,051 + AZOBR_RS26185 0.85 +0.1
21,052 - AZOBR_RS26185 0.85 +0.2
21,052 - AZOBR_RS26185 0.85 -0.2
21,052 - AZOBR_RS26185 0.85 -0.8
21,052 - AZOBR_RS26185 0.85 -0.5
21,052 - AZOBR_RS26185 0.85 -1.4
21,052 - AZOBR_RS26185 0.85 +0.8
21,052 - AZOBR_RS26185 0.85 -0.7
21,104 - +0.3
21,169 + +0.0
21,169 + -1.5
21,177 + -0.8
21,177 + +0.3
21,177 + +1.6
21,178 - +1.1
21,178 - +1.1
21,178 - -0.5
21,305 + +0.1
21,305 + +0.5
21,305 + +0.5
21,365 - AZOBR_RS26190 0.10 +0.5
21,365 - AZOBR_RS26190 0.10 +2.1
21,365 - AZOBR_RS26190 0.10 -1.0
21,415 + AZOBR_RS26190 0.15 +0.3
21,475 + AZOBR_RS26190 0.21 +0.1
21,476 - AZOBR_RS26190 0.21 -0.7
21,599 + AZOBR_RS26190 0.33 +2.1
21,599 + AZOBR_RS26190 0.33 +1.1
21,599 + AZOBR_RS26190 0.33 +0.1
21,600 - AZOBR_RS26190 0.33 -1.1
21,600 - AZOBR_RS26190 0.33 -0.7
21,600 - AZOBR_RS26190 0.33 -0.5
21,600 - AZOBR_RS26190 0.33 -0.9
21,600 - AZOBR_RS26190 0.33 -0.7
21,690 + AZOBR_RS26190 0.42 -0.9
21,690 + AZOBR_RS26190 0.42 +1.1
21,690 + AZOBR_RS26190 0.42 +2.1
21,855 + AZOBR_RS26190 0.58 +1.1
21,984 - AZOBR_RS26190 0.70 -1.0
21,984 - AZOBR_RS26190 0.70 -0.8
21,984 - AZOBR_RS26190 0.70 +0.1
21,984 - AZOBR_RS26190 0.70 +1.1
22,029 - AZOBR_RS26190 0.75 -0.0
22,040 + AZOBR_RS26190 0.76 +2.1
22,040 + AZOBR_RS26190 0.76 +1.1
22,402 + -0.2
22,402 + +0.5
22,402 + +0.3
22,402 + +1.1
22,403 - -0.2
22,403 - -0.6
22,403 - +0.4
22,440 + +0.8
22,441 - -0.2
22,441 - -0.1
22,442 + +0.8
22,589 - +1.1
22,656 + +2.1
22,656 + -0.2
22,656 + -0.2
22,697 + -0.3
22,697 + +0.2
22,697 + -0.2
22,697 + +2.1
22,697 + +1.1
22,698 - +1.1
22,698 - +0.5
22,702 + -0.1
22,702 + -0.5
22,703 - +0.5
22,703 - +0.5
22,709 + +2.1
22,710 - +0.5
22,758 - +2.1
22,763 + +0.5
22,763 + +0.3
22,763 + +2.1
22,763 + +2.1
22,763 + +2.1
22,763 + -0.9
22,763 + +1.1
22,763 + -0.6
22,764 - +2.1
22,764 - -0.7
22,764 - +2.1
22,764 - +2.1
22,764 - +1.1
22,764 - +2.1
22,764 - +0.1
22,764 - +1.1
22,944 - +1.1
22,986 + +2.1
23,183 + -0.2
23,184 - -0.2
23,184 - -0.0
23,184 - +0.1
23,185 + -0.1
23,186 - +2.1
23,213 + +1.1
23,213 + +0.1
23,213 + -0.7
23,214 - +1.1
23,214 - +2.1
23,259 + +0.4
23,259 + +1.1
23,259 + -1.1
23,275 + +2.8
23,275 + +0.5
23,276 - -0.8
23,276 - -0.7

Or see this region's nucleotide sequence