Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06210

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06200 and AZOBR_RS06205 are separated by 185 nucleotidesAZOBR_RS06205 and AZOBR_RS06210 are separated by 172 nucleotidesAZOBR_RS06210 and AZOBR_RS06215 are separated by 144 nucleotidesAZOBR_RS06215 and AZOBR_RS06220 are separated by 308 nucleotides AZOBR_RS06200: AZOBR_RS06200 - NAD(P)H quinone oxidoreductase, at 1,313,434 to 1,314,441 _RS06200 AZOBR_RS06205: AZOBR_RS06205 - hypothetical protein, at 1,314,627 to 1,314,815 _RS06205 AZOBR_RS06210: AZOBR_RS06210 - membrane protein, at 1,314,988 to 1,315,827 _RS06210 AZOBR_RS06215: AZOBR_RS06215 - hypothetical protein, at 1,315,972 to 1,316,178 _RS06215 AZOBR_RS06220: AZOBR_RS06220 - hypothetical protein, at 1,316,487 to 1,316,714 _RS06220 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -1 0 1at 1314.128 kb on + strand, within AZOBR_RS06200at 1314.711 kb on + strandat 1314.712 kb on - strand, within AZOBR_RS06205at 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1315.571 kb on + strand, within AZOBR_RS06210at 1315.571 kb on + strand, within AZOBR_RS06210at 1315.571 kb on + strand, within AZOBR_RS06210at 1315.572 kb on - strand, within AZOBR_RS06210at 1315.637 kb on + strand, within AZOBR_RS06210at 1315.736 kb on + strand, within AZOBR_RS06210at 1315.736 kb on + strand, within AZOBR_RS06210at 1315.736 kb on + strand, within AZOBR_RS06210at 1315.737 kb on - strand, within AZOBR_RS06210at 1315.876 kb on + strandat 1315.877 kb on - strandat 1316.205 kb on + strandat 1316.488 kb on + strandat 1316.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,314,128 + AZOBR_RS06200 0.69 -0.2
1,314,711 + -0.3
1,314,712 - AZOBR_RS06205 0.45 +0.7
1,314,912 + +0.2
1,314,912 + +0.0
1,314,912 + +0.9
1,314,912 + -0.9
1,314,912 + +0.2
1,314,913 - +0.5
1,314,913 - +0.1
1,314,913 - -0.3
1,314,913 - -0.7
1,314,913 - -0.5
1,315,571 + AZOBR_RS06210 0.69 +0.1
1,315,571 + AZOBR_RS06210 0.69 +0.2
1,315,571 + AZOBR_RS06210 0.69 +0.0
1,315,572 - AZOBR_RS06210 0.70 +1.2
1,315,637 + AZOBR_RS06210 0.77 +0.1
1,315,736 + AZOBR_RS06210 0.89 +0.0
1,315,736 + AZOBR_RS06210 0.89 -0.5
1,315,736 + AZOBR_RS06210 0.89 +0.4
1,315,737 - AZOBR_RS06210 0.89 -0.5
1,315,876 + -1.5
1,315,877 - +1.2
1,316,205 + -0.2
1,316,488 + -0.9
1,316,488 + -0.6

Or see this region's nucleotide sequence