Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26800

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26790 and AZOBR_RS26795 are separated by 146 nucleotidesAZOBR_RS26795 and AZOBR_RS26800 overlap by 4 nucleotidesAZOBR_RS26800 and AZOBR_RS26805 are separated by 427 nucleotides AZOBR_RS26790: AZOBR_RS26790 - copper-containing nitrite reductase, at 160,397 to 161,461 _RS26790 AZOBR_RS26795: AZOBR_RS26795 - hypothetical protein, at 161,608 to 162,234 _RS26795 AZOBR_RS26800: AZOBR_RS26800 - hypothetical protein, at 162,231 to 162,803 _RS26800 AZOBR_RS26805: AZOBR_RS26805 - malonyl-CoA synthase, at 163,231 to 164,769 _RS26805 Position (kb) 162 163Strain fitness (log2 ratio) -1 0 1 2at 161.321 kb on + strand, within AZOBR_RS26790at 161.321 kb on + strand, within AZOBR_RS26790at 161.321 kb on + strand, within AZOBR_RS26790at 161.321 kb on + strand, within AZOBR_RS26790at 161.321 kb on + strand, within AZOBR_RS26790at 161.321 kb on + strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.322 kb on - strand, within AZOBR_RS26790at 161.626 kb on + strandat 161.626 kb on + strandat 161.626 kb on + strandat 161.626 kb on + strandat 161.626 kb on + strandat 161.626 kb on + strandat 161.626 kb on + strandat 161.627 kb on - strandat 161.627 kb on - strandat 161.627 kb on - strandat 161.627 kb on - strandat 161.627 kb on - strandat 161.705 kb on - strand, within AZOBR_RS26795at 161.710 kb on + strand, within AZOBR_RS26795at 161.764 kb on + strand, within AZOBR_RS26795at 161.764 kb on + strand, within AZOBR_RS26795at 161.765 kb on - strand, within AZOBR_RS26795at 161.777 kb on + strand, within AZOBR_RS26795at 161.778 kb on - strand, within AZOBR_RS26795at 161.798 kb on - strand, within AZOBR_RS26795at 162.340 kb on - strand, within AZOBR_RS26800at 162.496 kb on - strand, within AZOBR_RS26800at 162.741 kb on + strand, within AZOBR_RS26800at 162.742 kb on - strand, within AZOBR_RS26800at 162.742 kb on - strand, within AZOBR_RS26800at 162.802 kb on - strandat 162.802 kb on - strandat 163.355 kb on + strandat 163.355 kb on + strandat 163.544 kb on + strand, within AZOBR_RS26805at 163.545 kb on - strand, within AZOBR_RS26805at 163.683 kb on - strand, within AZOBR_RS26805at 163.791 kb on - strand, within AZOBR_RS26805

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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161,321 + AZOBR_RS26790 0.87 +0.5
161,321 + AZOBR_RS26790 0.87 -0.3
161,321 + AZOBR_RS26790 0.87 -0.3
161,321 + AZOBR_RS26790 0.87 +0.5
161,321 + AZOBR_RS26790 0.87 -0.3
161,321 + AZOBR_RS26790 0.87 -0.1
161,322 - AZOBR_RS26790 0.87 +0.1
161,322 - AZOBR_RS26790 0.87 +1.2
161,322 - AZOBR_RS26790 0.87 +0.1
161,322 - AZOBR_RS26790 0.87 +0.5
161,322 - AZOBR_RS26790 0.87 +0.5
161,322 - AZOBR_RS26790 0.87 -0.3
161,626 + -0.4
161,626 + -0.1
161,626 + +1.5
161,626 + +0.5
161,626 + +0.6
161,626 + +1.7
161,626 + +0.4
161,627 - +0.4
161,627 - -0.1
161,627 - -1.0
161,627 - +0.6
161,627 - -0.5
161,705 - AZOBR_RS26795 0.15 +0.1
161,710 + AZOBR_RS26795 0.16 +0.3
161,764 + AZOBR_RS26795 0.25 +2.1
161,764 + AZOBR_RS26795 0.25 +2.1
161,765 - AZOBR_RS26795 0.25 -0.6
161,777 + AZOBR_RS26795 0.27 +0.1
161,778 - AZOBR_RS26795 0.27 +0.1
161,798 - AZOBR_RS26795 0.30 -0.1
162,340 - AZOBR_RS26800 0.19 -0.1
162,496 - AZOBR_RS26800 0.46 +0.1
162,741 + AZOBR_RS26800 0.89 -0.5
162,742 - AZOBR_RS26800 0.89 -1.1
162,742 - AZOBR_RS26800 0.89 -1.3
162,802 - -1.4
162,802 - +0.8
163,355 + +0.0
163,355 + -0.4
163,544 + AZOBR_RS26805 0.20 +0.3
163,545 - AZOBR_RS26805 0.20 -0.2
163,683 - AZOBR_RS26805 0.29 +0.3
163,791 - AZOBR_RS26805 0.36 -0.5

Or see this region's nucleotide sequence