Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20475

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20465 and AZOBR_RS20470 are separated by 98 nucleotidesAZOBR_RS20470 and AZOBR_RS20475 are separated by 64 nucleotidesAZOBR_RS20475 and AZOBR_RS20480 are separated by 184 nucleotides AZOBR_RS20465: AZOBR_RS20465 - conserved exported protein of unknown function, at 1,357,671 to 1,358,255 _RS20465 AZOBR_RS20470: AZOBR_RS20470 - methionine biosynthesis protein, at 1,358,354 to 1,358,950 _RS20470 AZOBR_RS20475: AZOBR_RS20475 - homoserine acetyltransferase, at 1,359,015 to 1,360,199 _RS20475 AZOBR_RS20480: AZOBR_RS20480 - chorismate mutase, at 1,360,384 to 1,361,298 _RS20480 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -1 0 1 2at 1358.715 kb on + strand, within AZOBR_RS20470at 1359.323 kb on - strand, within AZOBR_RS20475at 1359.323 kb on - strand, within AZOBR_RS20475at 1359.343 kb on + strand, within AZOBR_RS20475at 1359.343 kb on + strand, within AZOBR_RS20475at 1359.343 kb on + strand, within AZOBR_RS20475at 1359.343 kb on + strand, within AZOBR_RS20475at 1359.344 kb on - strand, within AZOBR_RS20475at 1359.349 kb on + strand, within AZOBR_RS20475at 1359.349 kb on + strand, within AZOBR_RS20475at 1359.349 kb on + strand, within AZOBR_RS20475at 1359.400 kb on + strand, within AZOBR_RS20475at 1359.400 kb on + strand, within AZOBR_RS20475at 1359.400 kb on + strand, within AZOBR_RS20475at 1359.401 kb on - strand, within AZOBR_RS20475at 1359.401 kb on - strand, within AZOBR_RS20475at 1359.434 kb on - strand, within AZOBR_RS20475at 1359.434 kb on - strand, within AZOBR_RS20475at 1359.499 kb on + strand, within AZOBR_RS20475at 1359.499 kb on + strand, within AZOBR_RS20475at 1359.500 kb on - strand, within AZOBR_RS20475at 1359.565 kb on + strand, within AZOBR_RS20475at 1359.565 kb on + strand, within AZOBR_RS20475at 1359.565 kb on + strand, within AZOBR_RS20475at 1359.565 kb on + strand, within AZOBR_RS20475at 1359.566 kb on - strand, within AZOBR_RS20475at 1359.566 kb on - strand, within AZOBR_RS20475at 1359.566 kb on - strand, within AZOBR_RS20475at 1359.566 kb on - strand, within AZOBR_RS20475at 1359.566 kb on - strand, within AZOBR_RS20475at 1359.836 kb on - strand, within AZOBR_RS20475at 1359.920 kb on - strand, within AZOBR_RS20475at 1359.920 kb on - strand, within AZOBR_RS20475at 1360.006 kb on + strand, within AZOBR_RS20475at 1360.072 kb on + strand, within AZOBR_RS20475at 1360.082 kb on - strandat 1360.273 kb on + strandat 1360.273 kb on + strandat 1360.273 kb on + strandat 1360.273 kb on + strandat 1360.334 kb on + strandat 1360.334 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,358,715 + AZOBR_RS20470 0.60 -0.3
1,359,323 - AZOBR_RS20475 0.26 -0.3
1,359,323 - AZOBR_RS20475 0.26 +0.4
1,359,343 + AZOBR_RS20475 0.28 +0.1
1,359,343 + AZOBR_RS20475 0.28 +0.1
1,359,343 + AZOBR_RS20475 0.28 +0.2
1,359,343 + AZOBR_RS20475 0.28 -0.1
1,359,344 - AZOBR_RS20475 0.28 -1.0
1,359,349 + AZOBR_RS20475 0.28 +0.6
1,359,349 + AZOBR_RS20475 0.28 +0.5
1,359,349 + AZOBR_RS20475 0.28 +0.4
1,359,400 + AZOBR_RS20475 0.32 +0.7
1,359,400 + AZOBR_RS20475 0.32 -0.6
1,359,400 + AZOBR_RS20475 0.32 +0.2
1,359,401 - AZOBR_RS20475 0.33 -0.0
1,359,401 - AZOBR_RS20475 0.33 +2.0
1,359,434 - AZOBR_RS20475 0.35 -0.8
1,359,434 - AZOBR_RS20475 0.35 -0.5
1,359,499 + AZOBR_RS20475 0.41 +0.4
1,359,499 + AZOBR_RS20475 0.41 +0.2
1,359,500 - AZOBR_RS20475 0.41 +1.0
1,359,565 + AZOBR_RS20475 0.46 +0.3
1,359,565 + AZOBR_RS20475 0.46 +0.2
1,359,565 + AZOBR_RS20475 0.46 -0.6
1,359,565 + AZOBR_RS20475 0.46 -0.1
1,359,566 - AZOBR_RS20475 0.46 -0.3
1,359,566 - AZOBR_RS20475 0.46 +0.7
1,359,566 - AZOBR_RS20475 0.46 +0.3
1,359,566 - AZOBR_RS20475 0.46 +2.0
1,359,566 - AZOBR_RS20475 0.46 -1.0
1,359,836 - AZOBR_RS20475 0.69 -0.3
1,359,920 - AZOBR_RS20475 0.76 +0.3
1,359,920 - AZOBR_RS20475 0.76 -0.8
1,360,006 + AZOBR_RS20475 0.84 +0.6
1,360,072 + AZOBR_RS20475 0.89 +0.5
1,360,082 - +0.5
1,360,273 + -0.0
1,360,273 + -1.0
1,360,273 + -0.7
1,360,273 + -0.8
1,360,334 + -1.0
1,360,334 + +0.3

Or see this region's nucleotide sequence