Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11890

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11885 and AZOBR_RS11890 are separated by 81 nucleotidesAZOBR_RS11890 and AZOBR_RS11895 are separated by 175 nucleotides AZOBR_RS11885: AZOBR_RS11885 - glutamate--cysteine ligase, at 2,499,942 to 2,501,306 _RS11885 AZOBR_RS11890: AZOBR_RS11890 - 16S rRNA methyltransferase, at 2,501,388 to 2,502,182 _RS11890 AZOBR_RS11895: AZOBR_RS11895 - 4-hydroxybenzoate polyprenyltransferase, at 2,502,358 to 2,503,242 _RS11895 Position (kb) 2501 2502 2503Strain fitness (log2 ratio) -1 0 1at 2501.661 kb on + strand, within AZOBR_RS11890at 2501.661 kb on + strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.686 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.694 kb on - strand, within AZOBR_RS11890at 2501.694 kb on - strand, within AZOBR_RS11890at 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.214 kb on - strandat 2502.214 kb on - strandat 2502.215 kb on + strandat 2502.216 kb on - strandat 2502.216 kb on - strandat 2502.216 kb on - strandat 2502.221 kb on + strandat 2502.273 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
remove
2,501,661 + AZOBR_RS11890 0.34 -0.1
2,501,661 + AZOBR_RS11890 0.34 +0.1
2,501,662 - AZOBR_RS11890 0.34 +0.0
2,501,662 - AZOBR_RS11890 0.34 -0.2
2,501,662 - AZOBR_RS11890 0.34 +0.0
2,501,686 + AZOBR_RS11890 0.37 +0.4
2,501,693 + AZOBR_RS11890 0.38 +0.1
2,501,693 + AZOBR_RS11890 0.38 +0.0
2,501,693 + AZOBR_RS11890 0.38 +1.1
2,501,693 + AZOBR_RS11890 0.38 +0.5
2,501,694 - AZOBR_RS11890 0.38 +0.5
2,501,694 - AZOBR_RS11890 0.38 -0.1
2,502,154 + +0.3
2,502,154 + -0.2
2,502,154 + +0.3
2,502,154 + -0.0
2,502,154 + +0.3
2,502,214 - -0.7
2,502,214 - +0.0
2,502,215 + -0.3
2,502,216 - -0.4
2,502,216 - +0.3
2,502,216 - +0.2
2,502,221 + -0.7
2,502,273 + -0.6

Or see this region's nucleotide sequence