Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08230 and AZOBR_RS08235 are separated by 440 nucleotides
AZOBR_RS08230: AZOBR_RS08230 - hypothetical protein, at 1,733,776 to 1,734,537
_RS08230
AZOBR_RS08235: AZOBR_RS08235 - L-proline and D-alanine ABC transporter, permease component 1 (from data) , at 1,734,978 to 1,735,883
_RS08235
Position (kb)
1733
1734
1735 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1732.971 kb on - strand at 1732.971 kb on - strand at 1733.219 kb on - strand at 1733.583 kb on - strand at 1733.708 kb on + strand at 1734.001 kb on + strand, within AZOBR_RS08230 at 1734.001 kb on + strand, within AZOBR_RS08230 at 1734.112 kb on + strand, within AZOBR_RS08230 at 1734.283 kb on + strand, within AZOBR_RS08230 at 1734.283 kb on + strand, within AZOBR_RS08230 at 1734.284 kb on - strand, within AZOBR_RS08230 at 1734.439 kb on + strand, within AZOBR_RS08230 at 1734.439 kb on + strand, within AZOBR_RS08230 at 1734.440 kb on - strand, within AZOBR_RS08230 at 1734.440 kb on - strand, within AZOBR_RS08230 at 1734.585 kb on + strand at 1734.610 kb on - strand at 1734.881 kb on - strand at 1734.918 kb on + strand at 1734.971 kb on + strand at 1734.972 kb on - strand at 1734.984 kb on + strand at 1735.030 kb on - strand at 1735.063 kb on - strand at 1735.063 kb on - strand at 1735.104 kb on + strand, within AZOBR_RS08235 at 1735.105 kb on - strand, within AZOBR_RS08235 at 1735.105 kb on - strand, within AZOBR_RS08235 at 1735.105 kb on - strand, within AZOBR_RS08235 at 1735.225 kb on - strand, within AZOBR_RS08235 at 1735.225 kb on - strand, within AZOBR_RS08235 at 1735.326 kb on + strand, within AZOBR_RS08235 at 1735.326 kb on + strand, within AZOBR_RS08235 at 1735.326 kb on + strand, within AZOBR_RS08235 at 1735.326 kb on + strand, within AZOBR_RS08235 at 1735.327 kb on - strand, within AZOBR_RS08235 at 1735.327 kb on - strand, within AZOBR_RS08235 at 1735.419 kb on + strand, within AZOBR_RS08235 at 1735.419 kb on + strand, within AZOBR_RS08235 at 1735.420 kb on - strand, within AZOBR_RS08235 at 1735.462 kb on - strand, within AZOBR_RS08235 at 1735.462 kb on - strand, within AZOBR_RS08235 at 1735.462 kb on - strand, within AZOBR_RS08235
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM remove 1,732,971 - -0.0 1,732,971 - +0.0 1,733,219 - +2.3 1,733,583 - +0.2 1,733,708 + -0.4 1,734,001 + AZOBR_RS08230 0.30 -0.4 1,734,001 + AZOBR_RS08230 0.30 +0.1 1,734,112 + AZOBR_RS08230 0.44 +0.9 1,734,283 + AZOBR_RS08230 0.67 -2.2 1,734,283 + AZOBR_RS08230 0.67 -0.7 1,734,284 - AZOBR_RS08230 0.67 +0.9 1,734,439 + AZOBR_RS08230 0.87 -0.5 1,734,439 + AZOBR_RS08230 0.87 +0.0 1,734,440 - AZOBR_RS08230 0.87 +0.3 1,734,440 - AZOBR_RS08230 0.87 -1.0 1,734,585 + -0.2 1,734,610 - -0.0 1,734,881 - -0.4 1,734,918 + -0.3 1,734,971 + +0.6 1,734,972 - -0.3 1,734,984 + +0.3 1,735,030 - +1.3 1,735,063 - +1.3 1,735,063 - +0.7 1,735,104 + AZOBR_RS08235 0.14 -0.9 1,735,105 - AZOBR_RS08235 0.14 +0.9 1,735,105 - AZOBR_RS08235 0.14 -0.7 1,735,105 - AZOBR_RS08235 0.14 +0.3 1,735,225 - AZOBR_RS08235 0.27 +0.6 1,735,225 - AZOBR_RS08235 0.27 +0.3 1,735,326 + AZOBR_RS08235 0.38 +0.3 1,735,326 + AZOBR_RS08235 0.38 -0.3 1,735,326 + AZOBR_RS08235 0.38 +0.0 1,735,326 + AZOBR_RS08235 0.38 -0.3 1,735,327 - AZOBR_RS08235 0.39 +0.8 1,735,327 - AZOBR_RS08235 0.39 +0.5 1,735,419 + AZOBR_RS08235 0.49 -1.1 1,735,419 + AZOBR_RS08235 0.49 -0.1 1,735,420 - AZOBR_RS08235 0.49 +0.8 1,735,462 - AZOBR_RS08235 0.53 -0.4 1,735,462 - AZOBR_RS08235 0.53 -1.2 1,735,462 - AZOBR_RS08235 0.53 +0.9
Or see this region's nucleotide sequence