Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08230

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08230 and AZOBR_RS08235 are separated by 440 nucleotides AZOBR_RS08230: AZOBR_RS08230 - hypothetical protein, at 1,733,776 to 1,734,537 _RS08230 AZOBR_RS08235: AZOBR_RS08235 - L-proline and D-alanine ABC transporter, permease component 1 (from data), at 1,734,978 to 1,735,883 _RS08235 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -2 -1 0 1 2at 1732.971 kb on - strandat 1732.971 kb on - strandat 1733.219 kb on - strandat 1733.583 kb on - strandat 1733.708 kb on + strandat 1734.001 kb on + strand, within AZOBR_RS08230at 1734.001 kb on + strand, within AZOBR_RS08230at 1734.112 kb on + strand, within AZOBR_RS08230at 1734.283 kb on + strand, within AZOBR_RS08230at 1734.283 kb on + strand, within AZOBR_RS08230at 1734.284 kb on - strand, within AZOBR_RS08230at 1734.439 kb on + strand, within AZOBR_RS08230at 1734.439 kb on + strand, within AZOBR_RS08230at 1734.440 kb on - strand, within AZOBR_RS08230at 1734.440 kb on - strand, within AZOBR_RS08230at 1734.585 kb on + strandat 1734.610 kb on - strandat 1734.881 kb on - strandat 1734.918 kb on + strandat 1734.971 kb on + strandat 1734.972 kb on - strandat 1734.984 kb on + strandat 1735.030 kb on - strandat 1735.063 kb on - strandat 1735.063 kb on - strandat 1735.104 kb on + strand, within AZOBR_RS08235at 1735.105 kb on - strand, within AZOBR_RS08235at 1735.105 kb on - strand, within AZOBR_RS08235at 1735.105 kb on - strand, within AZOBR_RS08235at 1735.225 kb on - strand, within AZOBR_RS08235at 1735.225 kb on - strand, within AZOBR_RS08235at 1735.326 kb on + strand, within AZOBR_RS08235at 1735.326 kb on + strand, within AZOBR_RS08235at 1735.326 kb on + strand, within AZOBR_RS08235at 1735.326 kb on + strand, within AZOBR_RS08235at 1735.327 kb on - strand, within AZOBR_RS08235at 1735.327 kb on - strand, within AZOBR_RS08235at 1735.419 kb on + strand, within AZOBR_RS08235at 1735.419 kb on + strand, within AZOBR_RS08235at 1735.420 kb on - strand, within AZOBR_RS08235at 1735.462 kb on - strand, within AZOBR_RS08235at 1735.462 kb on - strand, within AZOBR_RS08235at 1735.462 kb on - strand, within AZOBR_RS08235

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,732,971 - -0.0
1,732,971 - +0.0
1,733,219 - +2.3
1,733,583 - +0.2
1,733,708 + -0.4
1,734,001 + AZOBR_RS08230 0.30 -0.4
1,734,001 + AZOBR_RS08230 0.30 +0.1
1,734,112 + AZOBR_RS08230 0.44 +0.9
1,734,283 + AZOBR_RS08230 0.67 -2.2
1,734,283 + AZOBR_RS08230 0.67 -0.7
1,734,284 - AZOBR_RS08230 0.67 +0.9
1,734,439 + AZOBR_RS08230 0.87 -0.5
1,734,439 + AZOBR_RS08230 0.87 +0.0
1,734,440 - AZOBR_RS08230 0.87 +0.3
1,734,440 - AZOBR_RS08230 0.87 -1.0
1,734,585 + -0.2
1,734,610 - -0.0
1,734,881 - -0.4
1,734,918 + -0.3
1,734,971 + +0.6
1,734,972 - -0.3
1,734,984 + +0.3
1,735,030 - +1.3
1,735,063 - +1.3
1,735,063 - +0.7
1,735,104 + AZOBR_RS08235 0.14 -0.9
1,735,105 - AZOBR_RS08235 0.14 +0.9
1,735,105 - AZOBR_RS08235 0.14 -0.7
1,735,105 - AZOBR_RS08235 0.14 +0.3
1,735,225 - AZOBR_RS08235 0.27 +0.6
1,735,225 - AZOBR_RS08235 0.27 +0.3
1,735,326 + AZOBR_RS08235 0.38 +0.3
1,735,326 + AZOBR_RS08235 0.38 -0.3
1,735,326 + AZOBR_RS08235 0.38 +0.0
1,735,326 + AZOBR_RS08235 0.38 -0.3
1,735,327 - AZOBR_RS08235 0.39 +0.8
1,735,327 - AZOBR_RS08235 0.39 +0.5
1,735,419 + AZOBR_RS08235 0.49 -1.1
1,735,419 + AZOBR_RS08235 0.49 -0.1
1,735,420 - AZOBR_RS08235 0.49 +0.8
1,735,462 - AZOBR_RS08235 0.53 -0.4
1,735,462 - AZOBR_RS08235 0.53 -1.2
1,735,462 - AZOBR_RS08235 0.53 +0.9

Or see this region's nucleotide sequence