Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08205 and AZOBR_RS08210 are separated by 31 nucleotides AZOBR_RS08210 and AZOBR_RS08215 are separated by 5 nucleotides AZOBR_RS08215 and AZOBR_RS08220 are separated by 129 nucleotides
AZOBR_RS08205: AZOBR_RS08205 - glycosyl transferase, at 1,729,281 to 1,730,009
_RS08205
AZOBR_RS08210: AZOBR_RS08210 - lipid A biosynthesis, at 1,730,041 to 1,730,376
_RS08210
AZOBR_RS08215: AZOBR_RS08215 - glycosyl transferase, at 1,730,382 to 1,732,058
_RS08215
AZOBR_RS08220: AZOBR_RS08220 - hypothetical protein, at 1,732,188 to 1,732,469
_RS08220
Position (kb) 1730
1731
1732
1733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand at 1729.864 kb on - strand, within AZOBR_RS08205 at 1729.864 kb on - strand at 1729.960 kb on - strand at 1730.239 kb on + strand, within AZOBR_RS08210 at 1730.545 kb on - strand at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.599 kb on - strand, within AZOBR_RS08215 at 1731.204 kb on + strand, within AZOBR_RS08215 at 1731.384 kb on + strand, within AZOBR_RS08215 at 1731.384 kb on + strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.549 kb on + strand, within AZOBR_RS08215 at 1731.613 kb on - strand, within AZOBR_RS08215 at 1731.613 kb on - strand, within AZOBR_RS08215 at 1732.005 kb on + strand at 1732.006 kb on - strand at 1732.006 kb on - strand at 1732.038 kb on + strand at 1732.105 kb on - strand at 1732.207 kb on + strand at 1732.278 kb on + strand, within AZOBR_RS08220 at 1732.279 kb on - strand, within AZOBR_RS08220 at 1732.279 kb on - strand, within AZOBR_RS08220 at 1732.307 kb on + strand, within AZOBR_RS08220 at 1732.307 kb on + strand, within AZOBR_RS08220 at 1732.308 kb on - strand, within AZOBR_RS08220 at 1732.308 kb on - strand, within AZOBR_RS08220 at 1732.568 kb on + strand at 1732.568 kb on + strand at 1732.718 kb on + strand at 1732.971 kb on - strand at 1732.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM remove 1,729,401 + AZOBR_RS08205 0.16 +1.9 1,729,401 + AZOBR_RS08205 0.16 -0.4 1,729,402 - AZOBR_RS08205 0.17 -0.7 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,402 - +1.9 1,729,402 - AZOBR_RS08205 0.17 +1.9 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,863 + AZOBR_RS08205 0.80 +1.9 1,729,863 + AZOBR_RS08205 0.80 +0.3 1,729,863 + AZOBR_RS08205 0.80 +0.9 1,729,863 + AZOBR_RS08205 0.80 -0.7 1,729,863 + +0.9 1,729,864 - AZOBR_RS08205 0.80 +0.3 1,729,864 - +1.9 1,729,960 - +1.9 1,730,239 + AZOBR_RS08210 0.59 -0.3 1,730,545 - +0.3 1,730,598 + AZOBR_RS08215 0.13 -0.1 1,730,598 + AZOBR_RS08215 0.13 +0.9 1,730,599 - AZOBR_RS08215 0.13 -0.1 1,731,204 + AZOBR_RS08215 0.49 +0.9 1,731,384 + AZOBR_RS08215 0.60 -1.5 1,731,384 + AZOBR_RS08215 0.60 +1.9 1,731,385 - AZOBR_RS08215 0.60 -1.1 1,731,385 - AZOBR_RS08215 0.60 +1.9 1,731,385 - AZOBR_RS08215 0.60 +1.9 1,731,385 - AZOBR_RS08215 0.60 +0.9 1,731,549 + AZOBR_RS08215 0.70 +0.3 1,731,613 - AZOBR_RS08215 0.73 +0.9 1,731,613 - AZOBR_RS08215 0.73 +1.9 1,732,005 + -2.1 1,732,006 - +0.9 1,732,006 - +0.9 1,732,038 + +0.3 1,732,105 - +0.3 1,732,207 + -0.4 1,732,278 + AZOBR_RS08220 0.32 +0.7 1,732,279 - AZOBR_RS08220 0.32 +0.2 1,732,279 - AZOBR_RS08220 0.32 -0.1 1,732,307 + AZOBR_RS08220 0.42 -0.5 1,732,307 + AZOBR_RS08220 0.42 -0.6 1,732,308 - AZOBR_RS08220 0.43 -0.1 1,732,308 - AZOBR_RS08220 0.43 +0.3 1,732,568 + +0.3 1,732,568 + -0.1 1,732,718 + +0.6 1,732,971 - -0.0 1,732,971 - +0.0
Or see this region's nucleotide sequence