Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06195

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06185 and AZOBR_RS06190 are separated by 57 nucleotidesAZOBR_RS06190 and AZOBR_RS06195 are separated by 156 nucleotidesAZOBR_RS06195 and AZOBR_RS06200 are separated by 320 nucleotides AZOBR_RS06185: AZOBR_RS06185 - carbonic anhydrase, at 1,310,996 to 1,311,688 _RS06185 AZOBR_RS06190: AZOBR_RS06190 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,311,746 to 1,312,339 _RS06190 AZOBR_RS06195: AZOBR_RS06195 - hypothetical protein, at 1,312,496 to 1,313,113 _RS06195 AZOBR_RS06200: AZOBR_RS06200 - NAD(P)H quinone oxidoreductase, at 1,313,434 to 1,314,441 _RS06200 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -1 0 1 2 3at 1311.733 kb on - strandat 1313.173 kb on - strandat 1313.230 kb on - strandat 1313.759 kb on + strand, within AZOBR_RS06200at 1313.759 kb on + strand, within AZOBR_RS06200at 1313.760 kb on - strand, within AZOBR_RS06200at 1313.760 kb on - strand, within AZOBR_RS06200at 1313.847 kb on - strand, within AZOBR_RS06200at 1313.847 kb on - strand, within AZOBR_RS06200

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,311,733 - +0.7
1,313,173 - +3.5
1,313,230 - -0.2
1,313,759 + AZOBR_RS06200 0.32 -0.8
1,313,759 + AZOBR_RS06200 0.32 -0.3
1,313,760 - AZOBR_RS06200 0.32 -0.8
1,313,760 - AZOBR_RS06200 0.32 -0.4
1,313,847 - AZOBR_RS06200 0.41 -0.9
1,313,847 - AZOBR_RS06200 0.41 -0.5

Or see this region's nucleotide sequence