Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05020

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS05010 and AZOBR_RS05020 are separated by 759 nucleotidesAZOBR_RS05020 and AZOBR_RS05025 are separated by 896 nucleotides AZOBR_RS05010: AZOBR_RS05010 - transposase, at 1,061,394 to 1,061,765 _RS05010 AZOBR_RS05020: AZOBR_RS05020 - hypothetical protein, at 1,062,525 to 1,062,797 _RS05020 AZOBR_RS05025: AZOBR_RS05025 - DNA mismatch repair protein MutL, at 1,063,694 to 1,065,592 _RS05025 Position (kb) 1062 1063Strain fitness (log2 ratio) -1 0 1at 1061.773 kb on - strandat 1062.542 kb on + strandat 1062.607 kb on + strand, within AZOBR_RS05020at 1062.607 kb on + strand, within AZOBR_RS05020at 1062.607 kb on + strand, within AZOBR_RS05020at 1062.608 kb on - strand, within AZOBR_RS05020at 1062.952 kb on + strandat 1062.952 kb on + strandat 1062.952 kb on + strandat 1062.952 kb on + strandat 1062.953 kb on - strandat 1062.953 kb on - strandat 1063.175 kb on - strandat 1063.175 kb on - strandat 1063.175 kb on - strandat 1063.231 kb on + strandat 1063.231 kb on + strandat 1063.232 kb on - strandat 1063.246 kb on + strandat 1063.246 kb on + strandat 1063.292 kb on - strandat 1063.292 kb on - strandat 1063.454 kb on + strandat 1063.675 kb on + strandat 1063.675 kb on + strandat 1063.676 kb on - strandat 1063.676 kb on - strandat 1063.743 kb on + strandat 1063.743 kb on + strandat 1063.743 kb on + strandat 1063.744 kb on - strandat 1063.744 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
remove
1,061,773 - +0.6
1,062,542 + +0.4
1,062,607 + AZOBR_RS05020 0.30 +0.7
1,062,607 + AZOBR_RS05020 0.30 +0.4
1,062,607 + AZOBR_RS05020 0.30 +0.6
1,062,608 - AZOBR_RS05020 0.30 +1.1
1,062,952 + +0.4
1,062,952 + -0.6
1,062,952 + +0.1
1,062,952 + +0.8
1,062,953 - +1.6
1,062,953 - -0.3
1,063,175 - +0.4
1,063,175 - +0.7
1,063,175 - +0.3
1,063,231 + -1.2
1,063,231 + +0.2
1,063,232 - -0.3
1,063,246 + -0.8
1,063,246 + -1.6
1,063,292 - +0.2
1,063,292 - -0.5
1,063,454 + +0.1
1,063,675 + +1.4
1,063,675 + -0.8
1,063,676 - +1.0
1,063,676 - +1.0
1,063,743 + +0.4
1,063,743 + +1.0
1,063,743 + -1.0
1,063,744 - -1.4
1,063,744 - -0.9

Or see this region's nucleotide sequence