Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04815

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04810 and AZOBR_RS04815 are separated by 181 nucleotidesAZOBR_RS04815 and AZOBR_RS04820 are separated by 176 nucleotides AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448 _RS04810 AZOBR_RS04815: AZOBR_RS04815 - radical SAM protein, at 1,012,630 to 1,013,547 _RS04815 AZOBR_RS04820: AZOBR_RS04820 - oxidoreductase, at 1,013,724 to 1,014,485 _RS04820 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -1 0 1 2 3at 1012.508 kb on + strandat 1012.508 kb on + strandat 1012.508 kb on + strandat 1013.186 kb on - strand, within AZOBR_RS04815at 1013.186 kb on - strandat 1013.186 kb on - strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.189 kb on - strand, within AZOBR_RS04815at 1013.413 kb on + strand, within AZOBR_RS04815at 1013.423 kb on + strand, within AZOBR_RS04815at 1013.595 kb on + strandat 1013.628 kb on + strandat 1013.628 kb on + strandat 1013.628 kb on + strandat 1013.668 kb on + strandat 1013.669 kb on - strandat 1013.669 kb on - strandat 1013.683 kb on + strandat 1013.790 kb on + strandat 1013.790 kb on + strandat 1013.790 kb on + strandat 1013.790 kb on + strandat 1013.790 kb on + strandat 1013.899 kb on + strand, within AZOBR_RS04820at 1013.899 kb on + strand, within AZOBR_RS04820at 1013.899 kb on + strand, within AZOBR_RS04820at 1013.899 kb on + strand, within AZOBR_RS04820at 1013.899 kb on + strand, within AZOBR_RS04820at 1013.899 kb on + strand, within AZOBR_RS04820at 1013.900 kb on - strand, within AZOBR_RS04820at 1013.900 kb on - strand, within AZOBR_RS04820at 1013.900 kb on - strand, within AZOBR_RS04820at 1013.900 kb on - strand, within AZOBR_RS04820at 1013.900 kb on - strand, within AZOBR_RS04820at 1014.001 kb on + strand, within AZOBR_RS04820at 1014.010 kb on + strand, within AZOBR_RS04820at 1014.010 kb on + strand, within AZOBR_RS04820at 1014.011 kb on - strand, within AZOBR_RS04820at 1014.011 kb on - strand, within AZOBR_RS04820at 1014.392 kb on - strand, within AZOBR_RS04820

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,012,508 + +0.4
1,012,508 + -0.4
1,012,508 + -0.1
1,013,186 - AZOBR_RS04815 0.61 +0.5
1,013,186 - -0.3
1,013,186 - AZOBR_RS04815 0.61 +1.0
1,013,188 + AZOBR_RS04815 0.61 -0.2
1,013,188 + AZOBR_RS04815 0.61 -0.5
1,013,188 + AZOBR_RS04815 0.61 -0.1
1,013,189 - AZOBR_RS04815 0.61 +0.3
1,013,413 + AZOBR_RS04815 0.85 -0.4
1,013,423 + AZOBR_RS04815 0.86 -0.3
1,013,595 + -0.2
1,013,628 + -0.3
1,013,628 + +0.0
1,013,628 + -0.2
1,013,668 + -0.5
1,013,669 - -0.4
1,013,669 - -0.3
1,013,683 + -1.3
1,013,790 + +0.3
1,013,790 + -0.3
1,013,790 + -0.5
1,013,790 + -1.3
1,013,790 + -0.3
1,013,899 + AZOBR_RS04820 0.23 +0.4
1,013,899 + AZOBR_RS04820 0.23 -1.2
1,013,899 + AZOBR_RS04820 0.23 +0.1
1,013,899 + AZOBR_RS04820 0.23 +0.2
1,013,899 + AZOBR_RS04820 0.23 +0.8
1,013,899 + AZOBR_RS04820 0.23 -0.8
1,013,900 - AZOBR_RS04820 0.23 -0.2
1,013,900 - AZOBR_RS04820 0.23 +0.3
1,013,900 - AZOBR_RS04820 0.23 -0.7
1,013,900 - AZOBR_RS04820 0.23 +3.3
1,013,900 - AZOBR_RS04820 0.23 -0.5
1,014,001 + AZOBR_RS04820 0.36 +0.3
1,014,010 + AZOBR_RS04820 0.38 -0.0
1,014,010 + AZOBR_RS04820 0.38 -0.3
1,014,011 - AZOBR_RS04820 0.38 -0.3
1,014,011 - AZOBR_RS04820 0.38 +0.5
1,014,392 - AZOBR_RS04820 0.88 -0.2

Or see this region's nucleotide sequence