Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04810 and AZOBR_RS04815 are separated by 181 nucleotides AZOBR_RS04815 and AZOBR_RS04820 are separated by 176 nucleotides
AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448
_RS04810
AZOBR_RS04815: AZOBR_RS04815 - radical SAM protein, at 1,012,630 to 1,013,547
_RS04815
AZOBR_RS04820: AZOBR_RS04820 - oxidoreductase, at 1,013,724 to 1,014,485
_RS04820
Position (kb)
1012
1013
1014 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1012.508 kb on + strand at 1012.508 kb on + strand at 1012.508 kb on + strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.186 kb on - strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.189 kb on - strand, within AZOBR_RS04815 at 1013.413 kb on + strand, within AZOBR_RS04815 at 1013.423 kb on + strand, within AZOBR_RS04815 at 1013.595 kb on + strand at 1013.628 kb on + strand at 1013.628 kb on + strand at 1013.628 kb on + strand at 1013.668 kb on + strand at 1013.669 kb on - strand at 1013.669 kb on - strand at 1013.683 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1014.001 kb on + strand, within AZOBR_RS04820 at 1014.010 kb on + strand, within AZOBR_RS04820 at 1014.010 kb on + strand, within AZOBR_RS04820 at 1014.011 kb on - strand, within AZOBR_RS04820 at 1014.011 kb on - strand, within AZOBR_RS04820 at 1014.392 kb on - strand, within AZOBR_RS04820
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM remove 1,012,508 + +0.4 1,012,508 + -0.4 1,012,508 + -0.1 1,013,186 - AZOBR_RS04815 0.61 +0.5 1,013,186 - -0.3 1,013,186 - AZOBR_RS04815 0.61 +1.0 1,013,188 + AZOBR_RS04815 0.61 -0.2 1,013,188 + AZOBR_RS04815 0.61 -0.5 1,013,188 + AZOBR_RS04815 0.61 -0.1 1,013,189 - AZOBR_RS04815 0.61 +0.3 1,013,413 + AZOBR_RS04815 0.85 -0.4 1,013,423 + AZOBR_RS04815 0.86 -0.3 1,013,595 + -0.2 1,013,628 + -0.3 1,013,628 + +0.0 1,013,628 + -0.2 1,013,668 + -0.5 1,013,669 - -0.4 1,013,669 - -0.3 1,013,683 + -1.3 1,013,790 + +0.3 1,013,790 + -0.3 1,013,790 + -0.5 1,013,790 + -1.3 1,013,790 + -0.3 1,013,899 + AZOBR_RS04820 0.23 +0.4 1,013,899 + AZOBR_RS04820 0.23 -1.2 1,013,899 + AZOBR_RS04820 0.23 +0.1 1,013,899 + AZOBR_RS04820 0.23 +0.2 1,013,899 + AZOBR_RS04820 0.23 +0.8 1,013,899 + AZOBR_RS04820 0.23 -0.8 1,013,900 - AZOBR_RS04820 0.23 -0.2 1,013,900 - AZOBR_RS04820 0.23 +0.3 1,013,900 - AZOBR_RS04820 0.23 -0.7 1,013,900 - AZOBR_RS04820 0.23 +3.3 1,013,900 - AZOBR_RS04820 0.23 -0.5 1,014,001 + AZOBR_RS04820 0.36 +0.3 1,014,010 + AZOBR_RS04820 0.38 -0.0 1,014,010 + AZOBR_RS04820 0.38 -0.3 1,014,011 - AZOBR_RS04820 0.38 -0.3 1,014,011 - AZOBR_RS04820 0.38 +0.5 1,014,392 - AZOBR_RS04820 0.88 -0.2
Or see this region's nucleotide sequence