Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29150

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29145 and AZOBR_RS29150 are separated by 51 nucleotidesAZOBR_RS29150 and AZOBR_RS29155 are separated by 239 nucleotides AZOBR_RS29145: AZOBR_RS29145 - peptidase, at 661,801 to 662,877 _RS29145 AZOBR_RS29150: AZOBR_RS29150 - TonB-denpendent receptor, at 662,929 to 665,322 _RS29150 AZOBR_RS29155: AZOBR_RS29155 - hypothetical protein, at 665,562 to 666,539 _RS29155 Position (kb) 662 663 664 665 666Strain fitness (log2 ratio) -2 -1 0 1 2 3at 661.937 kb on + strand, within AZOBR_RS29145at 661.937 kb on + strand, within AZOBR_RS29145at 661.938 kb on - strand, within AZOBR_RS29145at 661.938 kb on - strand, within AZOBR_RS29145at 662.178 kb on - strand, within AZOBR_RS29145at 662.216 kb on + strand, within AZOBR_RS29145at 662.384 kb on + strand, within AZOBR_RS29145at 662.384 kb on + strand, within AZOBR_RS29145at 662.384 kb on + strand, within AZOBR_RS29145at 662.385 kb on - strand, within AZOBR_RS29145at 662.984 kb on + strandat 662.984 kb on + strandat 663.009 kb on - strandat 663.009 kb on - strandat 663.140 kb on + strandat 663.356 kb on + strand, within AZOBR_RS29150at 663.357 kb on - strand, within AZOBR_RS29150at 663.404 kb on + strand, within AZOBR_RS29150at 663.405 kb on - strand, within AZOBR_RS29150at 663.405 kb on - strand, within AZOBR_RS29150at 663.506 kb on + strand, within AZOBR_RS29150at 663.506 kb on + strand, within AZOBR_RS29150at 663.603 kb on - strand, within AZOBR_RS29150at 663.701 kb on + strand, within AZOBR_RS29150at 663.785 kb on + strand, within AZOBR_RS29150at 663.881 kb on + strand, within AZOBR_RS29150at 663.882 kb on - strand, within AZOBR_RS29150at 664.094 kb on + strand, within AZOBR_RS29150at 664.094 kb on + strand, within AZOBR_RS29150at 664.094 kb on + strand, within AZOBR_RS29150at 664.095 kb on - strand, within AZOBR_RS29150at 664.137 kb on - strand, within AZOBR_RS29150at 664.164 kb on - strand, within AZOBR_RS29150at 664.205 kb on + strand, within AZOBR_RS29150at 664.206 kb on - strandat 664.223 kb on + strand, within AZOBR_RS29150at 664.268 kb on + strand, within AZOBR_RS29150at 664.268 kb on + strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.269 kb on - strand, within AZOBR_RS29150at 664.346 kb on + strand, within AZOBR_RS29150at 664.505 kb on + strand, within AZOBR_RS29150at 664.505 kb on + strand, within AZOBR_RS29150at 664.682 kb on + strand, within AZOBR_RS29150at 664.682 kb on + strand, within AZOBR_RS29150at 664.844 kb on + strand, within AZOBR_RS29150at 664.845 kb on - strand, within AZOBR_RS29150at 665.582 kb on - strandat 665.582 kb on - strandat 665.582 kb on - strandat 665.670 kb on + strand, within AZOBR_RS29155at 665.670 kb on + strand, within AZOBR_RS29155at 666.275 kb on + strand, within AZOBR_RS29155at 666.276 kb on - strand, within AZOBR_RS29155at 666.276 kb on - strand, within AZOBR_RS29155

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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661,937 + AZOBR_RS29145 0.13 +0.5
661,937 + AZOBR_RS29145 0.13 +1.4
661,938 - AZOBR_RS29145 0.13 -0.6
661,938 - AZOBR_RS29145 0.13 +0.1
662,178 - AZOBR_RS29145 0.35 +0.1
662,216 + AZOBR_RS29145 0.39 -0.3
662,384 + AZOBR_RS29145 0.54 +0.1
662,384 + AZOBR_RS29145 0.54 -0.1
662,384 + AZOBR_RS29145 0.54 -0.1
662,385 - AZOBR_RS29145 0.54 -0.4
662,984 + +0.1
662,984 + +0.5
663,009 - +0.5
663,009 - +0.3
663,140 + +0.2
663,356 + AZOBR_RS29150 0.18 -0.3
663,357 - AZOBR_RS29150 0.18 -0.1
663,404 + AZOBR_RS29150 0.20 -0.1
663,405 - AZOBR_RS29150 0.20 +0.0
663,405 - AZOBR_RS29150 0.20 -0.3
663,506 + AZOBR_RS29150 0.24 +1.7
663,506 + AZOBR_RS29150 0.24 -0.3
663,603 - AZOBR_RS29150 0.28 -1.1
663,701 + AZOBR_RS29150 0.32 -0.5
663,785 + AZOBR_RS29150 0.36 +0.0
663,881 + AZOBR_RS29150 0.40 -0.0
663,882 - AZOBR_RS29150 0.40 -1.6
664,094 + AZOBR_RS29150 0.49 -0.1
664,094 + AZOBR_RS29150 0.49 -0.3
664,094 + AZOBR_RS29150 0.49 -0.5
664,095 - AZOBR_RS29150 0.49 +1.2
664,137 - AZOBR_RS29150 0.50 -0.6
664,164 - AZOBR_RS29150 0.52 -0.3
664,205 + AZOBR_RS29150 0.53 -0.8
664,206 - +1.0
664,223 + AZOBR_RS29150 0.54 +0.1
664,268 + AZOBR_RS29150 0.56 +0.2
664,268 + AZOBR_RS29150 0.56 -0.3
664,269 - AZOBR_RS29150 0.56 +0.3
664,269 - AZOBR_RS29150 0.56 -0.1
664,269 - AZOBR_RS29150 0.56 +0.1
664,269 - AZOBR_RS29150 0.56 +0.8
664,269 - AZOBR_RS29150 0.56 -0.7
664,269 - AZOBR_RS29150 0.56 -0.9
664,269 - AZOBR_RS29150 0.56 -0.1
664,269 - AZOBR_RS29150 0.56 +0.2
664,346 + AZOBR_RS29150 0.59 -0.3
664,505 + AZOBR_RS29150 0.66 -0.4
664,505 + AZOBR_RS29150 0.66 -0.3
664,682 + AZOBR_RS29150 0.73 +0.1
664,682 + AZOBR_RS29150 0.73 +2.6
664,844 + AZOBR_RS29150 0.80 -0.6
664,845 - AZOBR_RS29150 0.80 +0.3
665,582 - -0.6
665,582 - -0.6
665,582 - +2.8
665,670 + AZOBR_RS29155 0.11 -0.7
665,670 + AZOBR_RS29155 0.11 -2.1
666,275 + AZOBR_RS29155 0.73 -2.6
666,276 - AZOBR_RS29155 0.73 -0.8
666,276 - AZOBR_RS29155 0.73 -2.0

Or see this region's nucleotide sequence