Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04785

Experiment: 6-Pentyl-2H-pyran-2-one 0.7162051667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04785 and AZOBR_RS04790 are separated by 175 nucleotides AZOBR_RS04785: AZOBR_RS04785 - ATPase AAA, at 1,005,171 to 1,007,105 _RS04785 AZOBR_RS04790: AZOBR_RS04790 - acetoin catabolism protein X, at 1,007,281 to 1,008,339 _RS04790 Position (kb) 1005 1006 1007 1008Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1004.188 kb on - strandat 1004.318 kb on + strandat 1004.318 kb on + strandat 1004.319 kb on - strandat 1004.319 kb on - strandat 1004.780 kb on + strandat 1004.780 kb on + strandat 1004.780 kb on + strandat 1004.780 kb on + strandat 1004.781 kb on - strandat 1004.790 kb on + strandat 1004.791 kb on - strandat 1004.791 kb on - strandat 1004.873 kb on + strandat 1004.873 kb on + strandat 1005.111 kb on + strandat 1005.315 kb on + strandat 1005.315 kb on + strandat 1005.315 kb on + strandat 1005.315 kb on + strandat 1005.315 kb on + strandat 1005.315 kb on + strandat 1005.316 kb on - strandat 1005.316 kb on - strandat 1005.316 kb on - strandat 1005.402 kb on + strand, within AZOBR_RS04785at 1005.427 kb on - strand, within AZOBR_RS04785at 1005.427 kb on - strand, within AZOBR_RS04785at 1005.516 kb on + strand, within AZOBR_RS04785at 1005.517 kb on - strand, within AZOBR_RS04785at 1005.735 kb on + strand, within AZOBR_RS04785at 1005.735 kb on + strand, within AZOBR_RS04785at 1005.736 kb on - strand, within AZOBR_RS04785at 1005.736 kb on - strand, within AZOBR_RS04785at 1005.736 kb on - strand, within AZOBR_RS04785at 1005.736 kb on - strand, within AZOBR_RS04785at 1005.792 kb on + strand, within AZOBR_RS04785at 1005.792 kb on + strand, within AZOBR_RS04785at 1005.792 kb on + strand, within AZOBR_RS04785at 1005.792 kb on + strand, within AZOBR_RS04785at 1005.793 kb on - strand, within AZOBR_RS04785at 1006.032 kb on - strand, within AZOBR_RS04785at 1006.641 kb on + strand, within AZOBR_RS04785at 1006.641 kb on + strand, within AZOBR_RS04785at 1006.641 kb on + strand, within AZOBR_RS04785at 1006.641 kb on + strand, within AZOBR_RS04785at 1006.641 kb on + strand, within AZOBR_RS04785at 1006.642 kb on - strand, within AZOBR_RS04785at 1006.645 kb on + strand, within AZOBR_RS04785at 1006.755 kb on + strand, within AZOBR_RS04785at 1006.756 kb on - strand, within AZOBR_RS04785at 1006.839 kb on + strand, within AZOBR_RS04785at 1007.243 kb on + strandat 1007.243 kb on + strandat 1007.243 kb on + strandat 1007.243 kb on + strandat 1007.875 kb on + strand, within AZOBR_RS04790at 1007.875 kb on + strand, within AZOBR_RS04790

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.7162051667 mM
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1,004,188 - +1.0
1,004,318 + +0.4
1,004,318 + +1.3
1,004,319 - +0.0
1,004,319 - -1.1
1,004,780 + -0.3
1,004,780 + +0.8
1,004,780 + -0.0
1,004,780 + +1.0
1,004,781 - +0.1
1,004,790 + -0.8
1,004,791 - +1.4
1,004,791 - +0.2
1,004,873 + -0.0
1,004,873 + -0.0
1,005,111 + +0.2
1,005,315 + -0.7
1,005,315 + -0.8
1,005,315 + -1.2
1,005,315 + +0.5
1,005,315 + +3.0
1,005,315 + +1.0
1,005,316 - -0.0
1,005,316 - +2.0
1,005,316 - -0.4
1,005,402 + AZOBR_RS04785 0.12 -0.8
1,005,427 - AZOBR_RS04785 0.13 +2.0
1,005,427 - AZOBR_RS04785 0.13 -1.3
1,005,516 + AZOBR_RS04785 0.18 -0.3
1,005,517 - AZOBR_RS04785 0.18 -0.2
1,005,735 + AZOBR_RS04785 0.29 -0.2
1,005,735 + AZOBR_RS04785 0.29 -0.3
1,005,736 - AZOBR_RS04785 0.29 +0.4
1,005,736 - AZOBR_RS04785 0.29 -1.8
1,005,736 - AZOBR_RS04785 0.29 +0.2
1,005,736 - AZOBR_RS04785 0.29 -0.7
1,005,792 + AZOBR_RS04785 0.32 -0.0
1,005,792 + AZOBR_RS04785 0.32 -0.5
1,005,792 + AZOBR_RS04785 0.32 -0.6
1,005,792 + AZOBR_RS04785 0.32 -2.0
1,005,793 - AZOBR_RS04785 0.32 +0.4
1,006,032 - AZOBR_RS04785 0.44 -1.6
1,006,641 + AZOBR_RS04785 0.76 -0.1
1,006,641 + AZOBR_RS04785 0.76 -0.3
1,006,641 + AZOBR_RS04785 0.76 -0.6
1,006,641 + AZOBR_RS04785 0.76 +0.4
1,006,641 + AZOBR_RS04785 0.76 +0.4
1,006,642 - AZOBR_RS04785 0.76 +0.4
1,006,645 + AZOBR_RS04785 0.76 +0.3
1,006,755 + AZOBR_RS04785 0.82 +0.2
1,006,756 - AZOBR_RS04785 0.82 -0.1
1,006,839 + AZOBR_RS04785 0.86 -0.1
1,007,243 + -1.5
1,007,243 + -2.4
1,007,243 + -0.3
1,007,243 + +1.4
1,007,875 + AZOBR_RS04790 0.56 +0.3
1,007,875 + AZOBR_RS04790 0.56 +0.1

Or see this region's nucleotide sequence