Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32270 and AZOBR_RS32275 are separated by 98 nucleotides AZOBR_RS32275 and AZOBR_RS32280 are separated by 1 nucleotides
AZOBR_RS32270: AZOBR_RS32270 - branched-chain amino acid ABC transporter substrate-binding protein, at 607,477 to 608,613
_RS32270
AZOBR_RS32275: AZOBR_RS32275 - branched-chain amino acid ABC transporter permease, at 608,712 to 609,584
_RS32275
AZOBR_RS32280: AZOBR_RS32280 - branched-chain amino acid ABC transporter permease, at 609,586 to 610,557
_RS32280
Position (kb) 608
609
610 Strain fitness (log2 ratio) -1
0
1
2
3 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.823 kb on - strand, within AZOBR_RS32270 at 607.975 kb on + strand, within AZOBR_RS32270 at 607.976 kb on - strand, within AZOBR_RS32270 at 607.976 kb on - strand, within AZOBR_RS32270 at 608.345 kb on - strand, within AZOBR_RS32270 at 608.356 kb on + strand, within AZOBR_RS32270 at 608.357 kb on - strand, within AZOBR_RS32270 at 608.392 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.504 kb on - strand at 608.764 kb on - strand at 608.764 kb on - strand at 608.839 kb on - strand, within AZOBR_RS32275 at 608.877 kb on + strand, within AZOBR_RS32275 at 608.877 kb on + strand, within AZOBR_RS32275 at 608.878 kb on - strand, within AZOBR_RS32275 at 608.878 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.480 kb on + strand, within AZOBR_RS32275 at 609.661 kb on + strand at 609.661 kb on + strand at 609.661 kb on + strand at 609.661 kb on + strand at 609.662 kb on - strand at 609.662 kb on - strand at 609.662 kb on - strand at 609.662 kb on - strand at 609.662 kb on - strand at 609.695 kb on - strand, within AZOBR_RS32280 at 609.733 kb on + strand, within AZOBR_RS32280 at 609.734 kb on - strand, within AZOBR_RS32280 at 609.734 kb on - strand, within AZOBR_RS32280 at 609.734 kb on - strand, within AZOBR_RS32280 at 609.734 kb on - strand, within AZOBR_RS32280 at 609.910 kb on + strand, within AZOBR_RS32280 at 609.910 kb on + strand, within AZOBR_RS32280 at 609.910 kb on + strand, within AZOBR_RS32280 at 609.911 kb on - strand, within AZOBR_RS32280 at 610.093 kb on + strand, within AZOBR_RS32280 at 610.093 kb on + strand, within AZOBR_RS32280 at 610.094 kb on - strand, within AZOBR_RS32280 at 610.160 kb on - strand, within AZOBR_RS32280 at 610.252 kb on + strand, within AZOBR_RS32280 at 610.252 kb on + strand, within AZOBR_RS32280 at 610.252 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.261 kb on + strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.262 kb on - strand, within AZOBR_RS32280 at 610.396 kb on + strand, within AZOBR_RS32280 at 610.397 kb on - strand, within AZOBR_RS32280 at 610.397 kb on - strand, within AZOBR_RS32280 at 610.553 kb on + strand at 610.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 607,822 + AZOBR_RS32270 0.30 +3.2 607,822 + AZOBR_RS32270 0.30 -0.1 607,822 + AZOBR_RS32270 0.30 +2.2 607,823 - AZOBR_RS32270 0.30 +0.8 607,975 + AZOBR_RS32270 0.44 +2.2 607,976 - AZOBR_RS32270 0.44 +0.6 607,976 - AZOBR_RS32270 0.44 -0.6 608,345 - AZOBR_RS32270 0.76 +0.1 608,356 + AZOBR_RS32270 0.77 -0.1 608,357 - AZOBR_RS32270 0.77 +0.5 608,392 + AZOBR_RS32270 0.80 -0.2 608,482 + AZOBR_RS32270 0.88 -0.6 608,482 + AZOBR_RS32270 0.88 -0.3 608,482 + AZOBR_RS32270 0.88 +0.7 608,483 - AZOBR_RS32270 0.88 -0.5 608,483 - AZOBR_RS32270 0.88 -0.1 608,483 - AZOBR_RS32270 0.88 -0.2 608,483 - AZOBR_RS32270 0.88 -0.5 608,504 - +1.0 608,764 - +0.5 608,764 - +0.1 608,839 - AZOBR_RS32275 0.15 -1.5 608,877 + AZOBR_RS32275 0.19 +0.0 608,877 + AZOBR_RS32275 0.19 +0.5 608,878 - AZOBR_RS32275 0.19 -0.2 608,878 - AZOBR_RS32275 0.19 -0.8 609,343 - AZOBR_RS32275 0.72 -0.4 609,343 - AZOBR_RS32275 0.72 -0.0 609,343 - AZOBR_RS32275 0.72 -1.5 609,480 + AZOBR_RS32275 0.88 -0.7 609,661 + -0.6 609,661 + +0.6 609,661 + -1.1 609,661 + +1.2 609,662 - +0.6 609,662 - -1.0 609,662 - -0.3 609,662 - -0.3 609,662 - -0.7 609,695 - AZOBR_RS32280 0.11 +1.2 609,733 + AZOBR_RS32280 0.15 -1.1 609,734 - AZOBR_RS32280 0.15 -0.2 609,734 - AZOBR_RS32280 0.15 +0.6 609,734 - AZOBR_RS32280 0.15 -0.1 609,734 - AZOBR_RS32280 0.15 -0.7 609,910 + AZOBR_RS32280 0.33 -0.9 609,910 + AZOBR_RS32280 0.33 +0.2 609,910 + AZOBR_RS32280 0.33 +0.2 609,911 - AZOBR_RS32280 0.33 +1.2 610,093 + AZOBR_RS32280 0.52 +1.2 610,093 + AZOBR_RS32280 0.52 -1.1 610,094 - AZOBR_RS32280 0.52 -0.2 610,160 - AZOBR_RS32280 0.59 +0.0 610,252 + AZOBR_RS32280 0.69 +0.3 610,252 + AZOBR_RS32280 0.69 -0.2 610,252 + AZOBR_RS32280 0.69 -0.1 610,261 + AZOBR_RS32280 0.69 +1.2 610,261 + AZOBR_RS32280 0.69 -0.4 610,261 + AZOBR_RS32280 0.69 +0.9 610,261 + AZOBR_RS32280 0.69 -0.6 610,261 + AZOBR_RS32280 0.69 -0.1 610,261 + AZOBR_RS32280 0.69 -0.6 610,261 + AZOBR_RS32280 0.69 +1.2 610,262 - AZOBR_RS32280 0.70 -0.8 610,262 - AZOBR_RS32280 0.70 -0.1 610,262 - AZOBR_RS32280 0.70 +0.2 610,262 - AZOBR_RS32280 0.70 -1.0 610,262 - AZOBR_RS32280 0.70 +1.2 610,262 - AZOBR_RS32280 0.70 +0.3 610,262 - AZOBR_RS32280 0.70 +0.1 610,262 - AZOBR_RS32280 0.70 +0.2 610,396 + AZOBR_RS32280 0.83 -0.5 610,397 - AZOBR_RS32280 0.83 +0.0 610,397 - AZOBR_RS32280 0.83 +1.2 610,553 + -0.4 610,554 - +0.3
Or see this region's nucleotide sequence