Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29600 and AZOBR_RS29605 are separated by 893 nucleotides AZOBR_RS29605 and AZOBR_RS29610 are separated by 369 nucleotides
AZOBR_RS29600: AZOBR_RS29600 - hypothetical protein, at 770,763 to 771,053
_RS29600
AZOBR_RS29605: AZOBR_RS29605 - transposase, at 771,947 to 772,924
_RS29605
AZOBR_RS29610: AZOBR_RS29610 - hypothetical protein, at 773,294 to 773,959
_RS29610
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 771.051 kb on + strand at 771.051 kb on + strand at 771.052 kb on - strand at 771.052 kb on - strand at 771.060 kb on - strand at 771.248 kb on + strand at 771.248 kb on + strand at 771.300 kb on - strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.513 kb on - strand at 771.515 kb on + strand at 771.515 kb on + strand at 771.516 kb on - strand at 771.516 kb on - strand at 771.578 kb on - strand at 771.578 kb on - strand at 771.578 kb on - strand at 771.587 kb on - strand at 771.921 kb on + strand at 772.032 kb on - strand at 772.032 kb on - strand at 772.122 kb on + strand, within AZOBR_RS29605 at 772.122 kb on + strand, within AZOBR_RS29605 at 772.123 kb on - strand, within AZOBR_RS29605 at 772.123 kb on - strand, within AZOBR_RS29605 at 772.281 kb on + strand, within AZOBR_RS29605 at 772.281 kb on + strand, within AZOBR_RS29605 at 772.282 kb on - strand, within AZOBR_RS29605 at 772.282 kb on - strand, within AZOBR_RS29605 at 772.563 kb on - strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.996 kb on - strand at 773.047 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.068 kb on - strand at 773.068 kb on - strand at 773.379 kb on + strand, within AZOBR_RS29610 at 773.453 kb on - strand, within AZOBR_RS29610 at 773.462 kb on - strand, within AZOBR_RS29610 at 773.522 kb on + strand, within AZOBR_RS29610 at 773.523 kb on - strand, within AZOBR_RS29610 at 773.525 kb on + strand, within AZOBR_RS29610 at 773.526 kb on - strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 771,051 + +0.1 771,051 + -0.1 771,052 - +1.2 771,052 - -1.9 771,060 - -2.8 771,248 + -0.5 771,248 + +2.2 771,300 - -0.3 771,512 + +0.4 771,512 + -0.5 771,512 + -0.0 771,512 + -0.1 771,512 + -0.8 771,512 + +0.2 771,513 - -0.5 771,513 - +0.6 771,513 - -0.1 771,513 - -0.4 771,513 - +0.4 771,513 - -0.2 771,513 - +0.1 771,513 - -0.1 771,515 + +0.1 771,515 + +0.4 771,516 - -0.4 771,516 - -0.6 771,578 - +0.9 771,578 - -0.2 771,578 - +0.0 771,587 - -0.0 771,921 + +0.4 772,032 - +0.0 772,032 - +1.6 772,122 + AZOBR_RS29605 0.18 -0.6 772,122 + AZOBR_RS29605 0.18 -1.3 772,123 - AZOBR_RS29605 0.18 -1.3 772,123 - AZOBR_RS29605 0.18 -0.1 772,281 + AZOBR_RS29605 0.34 -0.8 772,281 + AZOBR_RS29605 0.34 -0.8 772,282 - AZOBR_RS29605 0.34 +1.2 772,282 - AZOBR_RS29605 0.34 +0.2 772,563 - AZOBR_RS29605 0.63 -0.3 772,782 + AZOBR_RS29605 0.85 +2.2 772,782 + AZOBR_RS29605 0.85 -0.2 772,996 - +0.3 773,047 + +0.2 773,065 + +0.4 773,065 + -0.1 773,065 + -0.7 773,065 + +0.6 773,065 + +1.2 773,065 + +2.2 773,065 + -1.2 773,065 + +0.6 773,065 + +0.7 773,066 - -0.0 773,066 - -0.0 773,066 - -0.5 773,066 - -0.1 773,066 - -1.3 773,066 - +0.2 773,066 - +0.2 773,066 - -0.0 773,066 - -0.7 773,066 - -0.3 773,068 - -0.2 773,068 - -0.3 773,379 + AZOBR_RS29610 0.13 +2.2 773,453 - AZOBR_RS29610 0.24 -0.9 773,462 - AZOBR_RS29610 0.25 +0.9 773,522 + AZOBR_RS29610 0.34 +0.6 773,523 - AZOBR_RS29610 0.34 -0.4 773,525 + AZOBR_RS29610 0.35 +1.2 773,526 - AZOBR_RS29610 0.35 -1.0 773,606 + AZOBR_RS29610 0.47 +1.2 773,606 + AZOBR_RS29610 0.47 +2.2 773,606 + AZOBR_RS29610 0.47 +0.2 773,606 + AZOBR_RS29610 0.47 +0.2 773,606 + AZOBR_RS29610 0.47 +2.2 773,606 + AZOBR_RS29610 0.47 -1.1 773,606 + AZOBR_RS29610 0.47 -0.8 773,606 + AZOBR_RS29610 0.47 -0.0 773,607 - AZOBR_RS29610 0.47 -0.1 773,607 - AZOBR_RS29610 0.47 +0.2 773,607 - AZOBR_RS29610 0.47 +0.9 773,607 - AZOBR_RS29610 0.47 +1.2 773,607 - AZOBR_RS29610 0.47 +1.6 773,607 - AZOBR_RS29610 0.47 +0.6 773,607 - AZOBR_RS29610 0.47 -0.3 773,607 - AZOBR_RS29610 0.47 -0.8 773,849 + AZOBR_RS29610 0.83 +0.8 773,849 + AZOBR_RS29610 0.83 -0.6 773,903 + -0.2
Or see this region's nucleotide sequence